Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 286 9e-72
seq236 87.8 5e-12
seq7460 84.2 6e-11
>seq5216
Length=2424
Score = 286 bits (316), Expect = 9e-72
Identities = 1050/1631 (64%), Gaps = 30/1631 (2%)
Strand=Plus/Plus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||||||||||||||| || | | ||| || || || | || || |||||
Sbjct 658 TTCACGCACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGC 717
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | ||||||||||| || |||||||| ||||| | || || |||
Sbjct 718 TGCTTCCTCGTGCACATGAAGGACGACTCGATCGAGGGCATCTTCCAGACGCTCGAGACC 777
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726
|| || | || |||||| | || ||||| || || || |||||||| | || ||
Sbjct 778 TGCGCGCGCATCTCCAAGTACGCCGGCGGCATCGGCGTCAACATCCACAACATCCGCGCC 837
Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786
| ||| ||| | |||||| || | ||||| || | || || ||||||||
Sbjct 838 TCGGGCAGCTACGTCGCCGGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGC 897
Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846
|| || || | || || | ||||| |||||||| || || |||||||| || | ||
Sbjct 898 GTCTTCAACGACACCGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTC 957
Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906
|| ||||| ||||||||| || ||||| | || || |||||||||| || |||
Sbjct 958 GCCATGTACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAAC 1017
Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966
|| || ||||| | || || || || || ||||| || || ||||| | |||| |
Sbjct 1018 CACGGCAAGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTT 1077
Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026
|||||| |||| || ||||| | | ||| | ||||| ||||| |||| | |||
Sbjct 1078 TTTATGCAGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAACGA--GGCCA 1135
Query 364027 --GGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATC 364082
|| || || ||||| | || ||||| | | | |||| ||||| || ||
Sbjct 1136 AGGGCCTCTCGGATGTCTACGGCGACGAGTTCAAGGAGCTC--TACGAGCGCTACGAGAA 1193
Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142
|||||| | || ||||| || | ||| ||| | || |||| ||| || |
Sbjct 1194 GGAGGGCCGCGGCCGCAAGACCATGCGCGCCCAGGACCTCTGGTACCAGATCCTGAGCTG 1253
Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202
||||| ||||| || || | ||| | | ||| || | |||||||||||||| ||
Sbjct 1254 CCAGATCGAGACCGGCGTGCCGTTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAA 1313
Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262
|||| || |||| || | || || ||||| || |||||||| || || ||| |
Sbjct 1314 CCAGAAGAACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTC 1373
Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA- 364321
|| || |||||| ||||| || ||||| || || ||| || | ||| || |
Sbjct 1374 GGCCCCTGACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCTGCGCAAGTTCGTCAA 1433
Query 364322 -----AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376
| || || || | ||| |||| || || || || ||| | | ||
Sbjct 1434 CATTGAGGAGGGCACCTACGACTTCCAGGCCCTCTACGATGTCACCAAGGTCGTCACCAA 1493
Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAA 364436
|| ||| || || |||||| || | || || | || |||||||| ||
Sbjct 1494 GAACCTCAACCGCGTCATCGACGGCAACTTCTACCCCGTCGAGGAGGCCGAGCGCAGCAA 1553
Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496
| ||| || ||||| || || |||| || ||||||||||| | | | ||| |||
Sbjct 1554 CACGCGCCACCGCCCCATCGGCATTGGCGTTCAGGGCCTCGCCAATGCGCTCATGGAGCT 1613
Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556
| | ||||| || || || || || || || ||||| || || ||
Sbjct 1614 GCGCTTCCCCTTTGAGAGCCCGGAGGCCCGCAAGCTCAACCGCGACATCTTCGAGACCAT 1673
Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTAC 364616
|| |||| ||| || || ||||| || |||| | |||| |||| ||
Sbjct 1674 CTACTTTGGCGCCTGCACCGCCTCGTGCGAGCTGGCGCAGGAGGAGGGCCCGTACCAGAC 1733
Query 364617 TTATGAGGGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC 364675
| | ||||| || | | || |||| || |||||||| || || ||||| | | ||
Sbjct 1734 CTTTTCCGGGTCGCC-CATGAGCGAGGGCAAGTTCCAGTTCGACCTCTGGAACGAGAAGC 1792
Query 364676 C--ATCTG----TCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTA 364729
| | | | || | ||| ||||||| ||||| ||| ||| | | |||| |||
Sbjct 1793 CCAACCCGGAGCTCGGCTGGGACTGGGAGACGCTGCGTCAGCGCGTCATGCAGCACGGTG 1852
Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789
|| ||||| || | ||||||||||||||||| || || | ||||| ||||| |
Sbjct 1853 TGCGTAACTCGCTGCTGGTCGCGCCCATGCCCACGGCCTCGACCTCGCAGATTCTCGGCA 1912
Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849
|| |||| ||| || || || || ||||| | || || ||||| || || | || |
Sbjct 1913 ACTGCGAGGCCTTTGAGCCCTTCACCAGCAACATGTACTCGCGCCGCGTCCTCGCTGGCG 1972
Query 364850 AATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTG 364909
| || |||| || || | |||| ||||||| || | ||||| || |||
Sbjct 1973 AGTTCACGGTCGTCAACACACACCTGCTCAAGGACCTCATCTCGCGCGGTCTCTGGACCC 2032
Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC 364969
||| ||| | ||||| |||| || || ||||||||| || | | |
Sbjct 2033 CGGCCATCCGCAACCAGATCATGGCCGACCGCGGCTCGGTGCAGAACGTTGGCGCCATCC 2092
Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACT--CTCA 365026
| || || || ||| | | ||||| ||||| ||||| || || || | || ||||
Sbjct 2093 CCGACGACCTCAAGGCGCTCTACAAGACCGTCTGGGAGAT---CAAGCAGCGCTGCCTCA 2149
Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086
| ||| | || ||||||||||| || || ||| ||| |||||| | ||| | | ||
Sbjct 2150 TCGATCTCGCCGCCGATCGCGGCGCCTTCATCGACCAGTCGCAGTCGCTCAACATCTACA 2209
Query 365087 TGACTCA-GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGT 365145
|| | | |||| | || | |||||| || || || || ||| |||||| ||||
Sbjct 2210 TGGCCGACGCCACCGTCAG-CAAGCTCACCTCGTGCCACTTTTACTCGTGGAAGCGCGGT 2268
Query 365146 CTTAAGACAGG 365156
|| ||||| ||
Sbjct 2269 CTCAAGACCGG 2279
>seq236
Length=1170
Score = 87.8 bits (96), Expect = 5e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 22504 tttGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaa 22563
||||| | || || ||||| ||||| || || | ||||| || ||||| ||||| ||
Sbjct 682 TTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAG 741
Query 22564 aaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGT 22623
|| || | | ||||||||||| || || || |||||| | || ||||| || |||||
Sbjct 742 AAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGGGC 801
Query 22624 CTTCATACCGATTTTGCGTGTATGCT 22649
| || ||||| ||||| || ||||
Sbjct 802 ATGCACACCGACTTTGCTTGCCTGCT 827
>seq7460
Length=1425
Score = 84.2 bits (92), Expect = 6e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541
||| || || |||||||| || |||||||| || || |||||||||||||| || || ||
Sbjct 861 CGAGGAGGGCGATCTCGGCCCCGTTTACGGCTTCCAGTGGCGCCACTTTGGCGCCGAGTA 920
Query 111542 CAAAACCATGCACGAC 111557
||| ||||||||||||
Sbjct 921 CAAGACCATGCACGAC 936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303173849617448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |