Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5216 286 9e-72 seq236 87.8 5e-12 seq7460 84.2 6e-11 >seq5216 Length=2424 Score = 286 bits (316), Expect = 9e-72 Identities = 1050/1631 (64%), Gaps = 30/1631 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||||||||| || | | ||| || || || | || || ||||| Sbjct 658 TTCACGCACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGC 717 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||||||||| || |||||||| ||||| | || || ||| Sbjct 718 TGCTTCCTCGTGCACATGAAGGACGACTCGATCGAGGGCATCTTCCAGACGCTCGAGACC 777 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || | || |||||| | || ||||| || || || |||||||| | || || Sbjct 778 TGCGCGCGCATCTCCAAGTACGCCGGCGGCATCGGCGTCAACATCCACAACATCCGCGCC 837 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | ||| ||| | |||||| || | ||||| || | || || |||||||| Sbjct 838 TCGGGCAGCTACGTCGCCGGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGC 897 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || || | || || | ||||| |||||||| || || |||||||| || | || Sbjct 898 GTCTTCAACGACACCGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTC 957 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || ||||| ||||||||| || ||||| | || || |||||||||| || ||| Sbjct 958 GCCATGTACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAAC 1017 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| | || || || || || ||||| || || ||||| | |||| | Sbjct 1018 CACGGCAAGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTT 1077 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 |||||| |||| || ||||| | | ||| | ||||| ||||| |||| | ||| Sbjct 1078 TTTATGCAGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAACGA--GGCCA 1135 Query 364027 --GGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATC 364082 || || || ||||| | || ||||| | | | |||| ||||| || || Sbjct 1136 AGGGCCTCTCGGATGTCTACGGCGACGAGTTCAAGGAGCTC--TACGAGCGCTACGAGAA 1193 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 |||||| | || ||||| || | ||| ||| | || |||| ||| || | Sbjct 1194 GGAGGGCCGCGGCCGCAAGACCATGCGCGCCCAGGACCTCTGGTACCAGATCCTGAGCTG 1253 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 ||||| ||||| || || | ||| | | ||| || | |||||||||||||| || Sbjct 1254 CCAGATCGAGACCGGCGTGCCGTTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAA 1313 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 |||| || |||| || | || || ||||| || |||||||| || || ||| | Sbjct 1314 CCAGAAGAACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTC 1373 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA- 364321 || || |||||| ||||| || ||||| || || ||| || | ||| || | Sbjct 1374 GGCCCCTGACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCTGCGCAAGTTCGTCAA 1433 Query 364322 -----AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376 | || || || | ||| |||| || || || || ||| | | || Sbjct 1434 CATTGAGGAGGGCACCTACGACTTCCAGGCCCTCTACGATGTCACCAAGGTCGTCACCAA 1493 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAA 364436 || ||| || || |||||| || | || || | || |||||||| || Sbjct 1494 GAACCTCAACCGCGTCATCGACGGCAACTTCTACCCCGTCGAGGAGGCCGAGCGCAGCAA 1553 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 | ||| || ||||| || || |||| || ||||||||||| | | | ||| ||| Sbjct 1554 CACGCGCCACCGCCCCATCGGCATTGGCGTTCAGGGCCTCGCCAATGCGCTCATGGAGCT 1613 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 | | ||||| || || || || || || || ||||| || || || Sbjct 1614 GCGCTTCCCCTTTGAGAGCCCGGAGGCCCGCAAGCTCAACCGCGACATCTTCGAGACCAT 1673 Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTAC 364616 || |||| ||| || || ||||| || |||| | |||| |||| || Sbjct 1674 CTACTTTGGCGCCTGCACCGCCTCGTGCGAGCTGGCGCAGGAGGAGGGCCCGTACCAGAC 1733 Query 364617 TTATGAGGGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC 364675 | | ||||| || | | || |||| || |||||||| || || ||||| | | || Sbjct 1734 CTTTTCCGGGTCGCC-CATGAGCGAGGGCAAGTTCCAGTTCGACCTCTGGAACGAGAAGC 1792 Query 364676 C--ATCTG----TCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTA 364729 | | | | || | ||| ||||||| ||||| ||| ||| | | |||| ||| Sbjct 1793 CCAACCCGGAGCTCGGCTGGGACTGGGAGACGCTGCGTCAGCGCGTCATGCAGCACGGTG 1852 Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789 || ||||| || | ||||||||||||||||| || || | ||||| ||||| | Sbjct 1853 TGCGTAACTCGCTGCTGGTCGCGCCCATGCCCACGGCCTCGACCTCGCAGATTCTCGGCA 1912 Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849 || |||| ||| || || || || ||||| | || || ||||| || || | || | Sbjct 1913 ACTGCGAGGCCTTTGAGCCCTTCACCAGCAACATGTACTCGCGCCGCGTCCTCGCTGGCG 1972 Query 364850 AATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTG 364909 | || |||| || || | |||| ||||||| || | ||||| || ||| Sbjct 1973 AGTTCACGGTCGTCAACACACACCTGCTCAAGGACCTCATCTCGCGCGGTCTCTGGACCC 2032 Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC 364969 ||| ||| | ||||| |||| || || ||||||||| || | | | Sbjct 2033 CGGCCATCCGCAACCAGATCATGGCCGACCGCGGCTCGGTGCAGAACGTTGGCGCCATCC 2092 Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACT--CTCA 365026 | || || || ||| | | ||||| ||||| ||||| || || || | || |||| Sbjct 2093 CCGACGACCTCAAGGCGCTCTACAAGACCGTCTGGGAGAT---CAAGCAGCGCTGCCTCA 2149 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | ||| | || ||||||||||| || || ||| ||| |||||| | ||| | | || Sbjct 2150 TCGATCTCGCCGCCGATCGCGGCGCCTTCATCGACCAGTCGCAGTCGCTCAACATCTACA 2209 Query 365087 TGACTCA-GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGT 365145 || | | |||| | || | |||||| || || || || ||| |||||| |||| Sbjct 2210 TGGCCGACGCCACCGTCAG-CAAGCTCACCTCGTGCCACTTTTACTCGTGGAAGCGCGGT 2268 Query 365146 CTTAAGACAGG 365156 || ||||| || Sbjct 2269 CTCAAGACCGG 2279 >seq236 Length=1170 Score = 87.8 bits (96), Expect = 5e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22504 tttGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaa 22563 ||||| | || || ||||| ||||| || || | ||||| || ||||| ||||| || Sbjct 682 TTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAG 741 Query 22564 aaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGT 22623 || || | | ||||||||||| || || || |||||| | || ||||| || ||||| Sbjct 742 AAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGGGC 801 Query 22624 CTTCATACCGATTTTGCGTGTATGCT 22649 | || ||||| ||||| || |||| Sbjct 802 ATGCACACCGACTTTGCTTGCCTGCT 827 >seq7460 Length=1425 Score = 84.2 bits (92), Expect = 6e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 ||| || || |||||||| || |||||||| || || |||||||||||||| || || || Sbjct 861 CGAGGAGGGCGATCTCGGCCCCGTTTACGGCTTCCAGTGGCGCCACTTTGGCGCCGAGTA 920 Query 111542 CAAAACCATGCACGAC 111557 ||| |||||||||||| Sbjct 921 CAAGACCATGCACGAC 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303173849617448