Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq10072 95.1 1e-14
seq6249 86.0 8e-12
seq2911 86.0 8e-12
>seq10072
Length=3483
Score = 95.1 bits (104), Expect = 1e-14
Identities = 143/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 126180 GGTGTAAATGTAGCGGGGAGCT-GCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACT 126238
|||| | ||||| || || ||| || | |||||||| |||| || |||||||| ||||
Sbjct 2352 GGTGAAGATGTAACGCGG-GCTCGCAGCGTCCTTGCCACCCTGCAGTCGCGTGCCGAACT 2294
Query 126239 GACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGA 126298
| || || | || | | | | ||||||| ||||||||||||||||| | |||
Sbjct 2293 GGCCCGAGGGGTACAGGAGCGGGAGATTGTTGCTGCCCACAAAGTCCTGCGCCATGTTGG 2234
Query 126299 CAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358
||||| | ||| |||||| ||||| | |||| ||||||||||| | || ||
Sbjct 2233 TGATGGTGGAGGTCAGAGACTGCTCACCGTGGTGGTAGGCGGTCTGCTCGCCGACAACGC 2174
Query 126359 CGCTCAGCTGCGCAACCTTGA 126379
|| ||||| || |||||||
Sbjct 2173 CGGCGAGCTGGGCCACCTTGA 2153
>seq6249
Length=3497
Score = 86.0 bits (94), Expect = 8e-12
Identities = 129/181 (71%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 15016 CATCGTAAAGGTTGTCATTGGCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTC 15075
|||| | ||||| || | || || |||||| | |||| | ||||||||||| | |||
Sbjct 2738 CATCATCAAGGTCGTTACGCGCGAGGTGCGCATGATCGAGCTGGGCGACAAGTTCTCCTC 2797
Query 15076 TGGTATGGCGCAAAAGGGC-ACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTA 15134
| | |||||||||| ||| |||| | || | || |||| |||||||||||||
Sbjct 2798 GCGCCACGGGCAAAAGGGCGTCGT-CGGCCTCATCGTGCCGCAGGTGGACATGCCCTTTA 2856
Query 15135 CCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGA 15194
| | ||||| |||||| || ||||| |||||| || | ||||| ||||||||
Sbjct 2857 CGGACCAGGGCATCGTGCCCGATATCATCATGAACCCCCACGGATTCCCGAGCCGCATGA 2916
Query 15195 C 15195
|
Sbjct 2917 C 2917
>seq2911
Length=3918
Score = 86.0 bits (94), Expect = 8e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15059 GGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAG 15118
|| ||||||||| ||| | | ||||||||| ||| | |||| | || |||
Sbjct 3115 GGTGACAAGTTTGCCTCGCGCCACGGGCAAAAGGGTGTCTGCAGTGTGATCTGGCCTCAG 3174
Query 15119 GAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGC 15178
|| || ||||||||||| | ||| |||||||| || |||| ||||||||||| ||
Sbjct 3175 GAGGATATGCCCTTTACGGAGTCGGGCATGACCCCGGACACCATCATCAACCCGCACGCT 3234
Query 15179 ATCCCGTCCCGCATGACCAT 15198
||||||| |||||||||||
Sbjct 3235 TTCCCGTCGCGCATGACCAT 3254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611309737206400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |