Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq10072 95.1 1e-14 seq6249 86.0 8e-12 seq2911 86.0 8e-12 >seq10072 Length=3483 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 126180 GGTGTAAATGTAGCGGGGAGCT-GCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACT 126238 |||| | ||||| || || ||| || | |||||||| |||| || |||||||| |||| Sbjct 2352 GGTGAAGATGTAACGCGG-GCTCGCAGCGTCCTTGCCACCCTGCAGTCGCGTGCCGAACT 2294 Query 126239 GACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGA 126298 | || || | || | | | | ||||||| ||||||||||||||||| | ||| Sbjct 2293 GGCCCGAGGGGTACAGGAGCGGGAGATTGTTGCTGCCCACAAAGTCCTGCGCCATGTTGG 2234 Query 126299 CAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 ||||| | ||| |||||| ||||| | |||| ||||||||||| | || || Sbjct 2233 TGATGGTGGAGGTCAGAGACTGCTCACCGTGGTGGTAGGCGGTCTGCTCGCCGACAACGC 2174 Query 126359 CGCTCAGCTGCGCAACCTTGA 126379 || ||||| || ||||||| Sbjct 2173 CGGCGAGCTGGGCCACCTTGA 2153 >seq6249 Length=3497 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 15016 CATCGTAAAGGTTGTCATTGGCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTC 15075 |||| | ||||| || | || || |||||| | |||| | ||||||||||| | ||| Sbjct 2738 CATCATCAAGGTCGTTACGCGCGAGGTGCGCATGATCGAGCTGGGCGACAAGTTCTCCTC 2797 Query 15076 TGGTATGGCGCAAAAGGGC-ACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTA 15134 | | |||||||||| ||| |||| | || | || |||| ||||||||||||| Sbjct 2798 GCGCCACGGGCAAAAGGGCGTCGT-CGGCCTCATCGTGCCGCAGGTGGACATGCCCTTTA 2856 Query 15135 CCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGA 15194 | | ||||| |||||| || ||||| |||||| || | ||||| |||||||| Sbjct 2857 CGGACCAGGGCATCGTGCCCGATATCATCATGAACCCCCACGGATTCCCGAGCCGCATGA 2916 Query 15195 C 15195 | Sbjct 2917 C 2917 >seq2911 Length=3918 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15059 GGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAG 15118 || ||||||||| ||| | | ||||||||| ||| | |||| | || ||| Sbjct 3115 GGTGACAAGTTTGCCTCGCGCCACGGGCAAAAGGGTGTCTGCAGTGTGATCTGGCCTCAG 3174 Query 15119 GAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGC 15178 || || ||||||||||| | ||| |||||||| || |||| ||||||||||| || Sbjct 3175 GAGGATATGCCCTTTACGGAGTCGGGCATGACCCCGGACACCATCATCAACCCGCACGCT 3234 Query 15179 ATCCCGTCCCGCATGACCAT 15198 ||||||| ||||||||||| Sbjct 3235 TTCCCGTCGCGCATGACCAT 3254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611309737206400