Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq10642 123 5e-23
seq6412 123 5e-23
seq236 89.7 1e-12
>seq10642
Length=2787
Score = 123 bits (136), Expect = 5e-23
Identities = 431/662 (65%), Gaps = 48/662 (7%)
Strand=Plus/Plus
Query 279723 ATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAG 279782
|||||||| |||||||| ||||||| || | |||||| |||| || | ||||||
Sbjct 1279 ATGAAGCTCGCCCTCACCTGCGCCATGCTCCGCAAGGCCGATATCCTTCTCATGGATGAG 1338
Query 279783 CCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAA----CCAG 279838
|| ||||||||| ||||| |||||| ||| | || |||||| | | ||
Sbjct 1339 CCCACCAACCACTTGGACGTGCTCAACGTCCAGTGGGTCGTTGACTACCTCATGGGCGAG 1398
Query 279839 TC-TG-AAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTG 279896
| || ||||| || | || ||||| ||||| |||||| | ||||| || |||
Sbjct 1399 CCGTGCAAGAACGTGACCTCGCTCATCGTCTCGCACGACACCAAGTTCCTCGACAACGTC 1458
Query 279897 TGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTG 279956
| | ||| || |||| || | || |||||| ||| ||| |||||||||
Sbjct 1459 GCCACGCACATTATCCACTTCGAC---ACCCTCAAGCTCAACAACTACAAGGGCAACCTG 1515
Query 279957 TCTGCTTTCGTGGCAAAGCGC---CCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCC 280013
|| ||||| | ||||| || ||||| |||||||| || || | ||
Sbjct 1516 TCCAAGTTCGTCG---AGCGCTTCCCGGAGGCTAAGGCCTACTACGATCTCA------CC 1566
Query 280014 ACCGCCAAGTGGG------AATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAG 280067
|| ||||| || | ||||| |||| || || || ||| ||| || |||
Sbjct 1567 GCCTCCAAGCTGGCCTTCAAGTTCCCCAAGCCGGGCCCGCTCGACGGCGTCAAGTCCAAG 1626
Query 280068 GATCGCGCAATCATGAAGCTCCGTGGC----GTCTCCTTTGCTTATCCCAATGGCCCCAA 280123
| ||| | |||||| ||| || | ||||| || | || || || ||
Sbjct 1627 GGCCGCCCCATCATG----TCCATGACCGATGTCTCGTTCACCTACCCGGGCTGCGAGAA 1682
Query 280124 ----CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTG---GTGTCA 280176
|| || |||| ||||| | || || ||| ||| || || | |||||
Sbjct 1683 GCCCCAGCTCGAGCACA-TCAACGTCCGCGTCTCGATGGCCTCGCGCATCGCCTGTGTC- 1740
Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236
|| |||| ||||| || ||||| ||| | ||||| |||| || |||||| | ||
Sbjct 1741 --GGCGCCAACGGTGCCGGCAAGTCCACCATGATCAAGCTCCTCACCGGCGAGTTCAAGC 1798
Query 280237 CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCG-GATGGCTTACGTCGCTCAGCAC 280295
|| | |||| | | | ||||| || ||| ||| | | || |||||||| ||||||
Sbjct 1799 CCTCGAAGGGTACTATCTTCAAGCACCCGAAC-TGCAAGTTCGCCTACGTCGCCCAGCAC 1857
Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355
|| ||||||||||||||| | || || |||| ||| | ||| | ||||| |||||||||
Sbjct 1858 GCCTTCCACCACATCGAGCAGCATCTCGACAAGACCGCCAACGAGTACATCCAGTGGCGC 1917
Query 280356 TA 280357
||
Sbjct 1918 TA 1919
>seq6412
Length=4986
Score = 123 bits (136), Expect = 5e-23
Identities = 258/380 (68%), Gaps = 16/380 (4%)
Strand=Plus/Plus
Query 218572 ATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTC 218631
|| |||||| |||| || ||||||||||| |||||||| ||| | ||||||||| |||
Sbjct 2467 ATCCCCAGCATGGTCGACGGCCTCAAGCCCTCGCAGCGCAAGGTGCTCTTTGCCTGCTTC 2526
Query 218632 AAGCGGAACCTGGTTCAA----GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGA 218687
||||| || | |||| || || |||||||| ||| | ||| || || || ||
Sbjct 2527 AAGCGCAA----GCTCAAGTCGGACATCAAGGTCGCGCAGCTCGTTGGCTACGTCTCGGA 2582
Query 218688 AATTTCTGGCTACCATCACGGTGAGCAGAGTCT-GCAG-GGT--GCCATTGTAGGCATGG 218743
|| | ||||| ||||||||| |||| || | || | || || ||||||
Sbjct 2583 GCACTCGGCGTACCACCACGGTGAG----GTCTCGCTGTCGTCGACGATCGTCAGCATGG 2638
Query 218744 CACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTT 218803
| ||| || ||||||| |||||||| ||| |||| |||||| ||| ||||| ||||
Sbjct 2639 CGCAGACCTTTGTGGGCTCGAACAACATCAACCTGCTCTTCCCCAGCGGCCAGTTCGGTT 2698
Query 218804 CTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGC 218863
| || | | || || ||||| || || || | || || ||||| | |||
Sbjct 2699 CGCGCATTCTCGGCGGCAAGGACGCGGCCTCGGCGCGTTACATTTTTACGCGCCTCGCGC 2758
Query 218864 CCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACG 218923
| | |||||| | | ||| | || ||| || | |||||| | || || |||||||
Sbjct 2759 CTCTCACGCGCAGGCTTTTCCACGAGCACGACGACGCGCTCCTCGACTACCTCGAGGACG 2818
Query 218924 ATGGTTCTTCGATTGAGCCC 218943
| || || || ||||||
Sbjct 2819 ACGGCCAGTCCATCGAGCCC 2838
>seq236
Length=1170
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903
||||| ||||||||||| ||||| | ||| ||||| | || || ||||| | ||
Sbjct 807 GTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCC 748
Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963
|| ||| ||||||||||||| ||||||||||| || ||||| | | ||||||||
Sbjct 747 GCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGC 688
Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA 251990
| | | | || |||||||| |||||
Sbjct 687 CGCAAAACCGACGAGGCGCTCGGCAAA 661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027695047172524
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |