Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10642 123 5e-23 seq6412 123 5e-23 seq236 89.7 1e-12 >seq10642 Length=2787 Score = 123 bits (136), Expect = 5e-23 Identities = 431/662 (65%), Gaps = 48/662 (7%) Strand=Plus/Plus Query 279723 ATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAG 279782 |||||||| |||||||| ||||||| || | |||||| |||| || | |||||| Sbjct 1279 ATGAAGCTCGCCCTCACCTGCGCCATGCTCCGCAAGGCCGATATCCTTCTCATGGATGAG 1338 Query 279783 CCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAA----CCAG 279838 || ||||||||| ||||| |||||| ||| | || |||||| | | || Sbjct 1339 CCCACCAACCACTTGGACGTGCTCAACGTCCAGTGGGTCGTTGACTACCTCATGGGCGAG 1398 Query 279839 TC-TG-AAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTG 279896 | || ||||| || | || ||||| ||||| |||||| | ||||| || ||| Sbjct 1399 CCGTGCAAGAACGTGACCTCGCTCATCGTCTCGCACGACACCAAGTTCCTCGACAACGTC 1458 Query 279897 TGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTG 279956 | | ||| || |||| || | || |||||| ||| ||| ||||||||| Sbjct 1459 GCCACGCACATTATCCACTTCGAC---ACCCTCAAGCTCAACAACTACAAGGGCAACCTG 1515 Query 279957 TCTGCTTTCGTGGCAAAGCGC---CCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCC 280013 || ||||| | ||||| || ||||| |||||||| || || | || Sbjct 1516 TCCAAGTTCGTCG---AGCGCTTCCCGGAGGCTAAGGCCTACTACGATCTCA------CC 1566 Query 280014 ACCGCCAAGTGGG------AATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAG 280067 || ||||| || | ||||| |||| || || || ||| ||| || ||| Sbjct 1567 GCCTCCAAGCTGGCCTTCAAGTTCCCCAAGCCGGGCCCGCTCGACGGCGTCAAGTCCAAG 1626 Query 280068 GATCGCGCAATCATGAAGCTCCGTGGC----GTCTCCTTTGCTTATCCCAATGGCCCCAA 280123 | ||| | |||||| ||| || | ||||| || | || || || || Sbjct 1627 GGCCGCCCCATCATG----TCCATGACCGATGTCTCGTTCACCTACCCGGGCTGCGAGAA 1682 Query 280124 ----CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTG---GTGTCA 280176 || || |||| ||||| | || || ||| ||| || || | ||||| Sbjct 1683 GCCCCAGCTCGAGCACA-TCAACGTCCGCGTCTCGATGGCCTCGCGCATCGCCTGTGTC- 1740 Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 || |||| ||||| || ||||| ||| | ||||| |||| || |||||| | || Sbjct 1741 --GGCGCCAACGGTGCCGGCAAGTCCACCATGATCAAGCTCCTCACCGGCGAGTTCAAGC 1798 Query 280237 CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCG-GATGGCTTACGTCGCTCAGCAC 280295 || | |||| | | | ||||| || ||| ||| | | || |||||||| |||||| Sbjct 1799 CCTCGAAGGGTACTATCTTCAAGCACCCGAAC-TGCAAGTTCGCCTACGTCGCCCAGCAC 1857 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || ||||||||||||||| | || || |||| ||| | ||| | ||||| ||||||||| Sbjct 1858 GCCTTCCACCACATCGAGCAGCATCTCGACAAGACCGCCAACGAGTACATCCAGTGGCGC 1917 Query 280356 TA 280357 || Sbjct 1918 TA 1919 >seq6412 Length=4986 Score = 123 bits (136), Expect = 5e-23 Identities = 258/380 (68%), Gaps = 16/380 (4%) Strand=Plus/Plus Query 218572 ATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTC 218631 || |||||| |||| || ||||||||||| |||||||| ||| | ||||||||| ||| Sbjct 2467 ATCCCCAGCATGGTCGACGGCCTCAAGCCCTCGCAGCGCAAGGTGCTCTTTGCCTGCTTC 2526 Query 218632 AAGCGGAACCTGGTTCAA----GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGA 218687 ||||| || | |||| || || |||||||| ||| | ||| || || || || Sbjct 2527 AAGCGCAA----GCTCAAGTCGGACATCAAGGTCGCGCAGCTCGTTGGCTACGTCTCGGA 2582 Query 218688 AATTTCTGGCTACCATCACGGTGAGCAGAGTCT-GCAG-GGT--GCCATTGTAGGCATGG 218743 || | ||||| ||||||||| |||| || | || | || || |||||| Sbjct 2583 GCACTCGGCGTACCACCACGGTGAG----GTCTCGCTGTCGTCGACGATCGTCAGCATGG 2638 Query 218744 CACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTT 218803 | ||| || ||||||| |||||||| ||| |||| |||||| ||| ||||| |||| Sbjct 2639 CGCAGACCTTTGTGGGCTCGAACAACATCAACCTGCTCTTCCCCAGCGGCCAGTTCGGTT 2698 Query 218804 CTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGC 218863 | || | | || || ||||| || || || | || || ||||| | ||| Sbjct 2699 CGCGCATTCTCGGCGGCAAGGACGCGGCCTCGGCGCGTTACATTTTTACGCGCCTCGCGC 2758 Query 218864 CCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACG 218923 | | |||||| | | ||| | || ||| || | |||||| | || || ||||||| Sbjct 2759 CTCTCACGCGCAGGCTTTTCCACGAGCACGACGACGCGCTCCTCGACTACCTCGAGGACG 2818 Query 218924 ATGGTTCTTCGATTGAGCCC 218943 | || || || |||||| Sbjct 2819 ACGGCCAGTCCATCGAGCCC 2838 >seq236 Length=1170 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| ||||||||||| ||||| | ||| ||||| | || || ||||| | || Sbjct 807 GTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCC 748 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||| ||||||||||| || ||||| | | |||||||| Sbjct 747 GCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGC 688 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA 251990 | | | | || |||||||| ||||| Sbjct 687 CGCAAAACCGACGAGGCGCTCGGCAAA 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027695047172524