Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 596 3e-165
seq236 322 9e-83
>seq5216
Length=2424
Score = 596 bits (660), Expect = 3e-165
Identities = 1356/2014 (67%), Gaps = 57/2014 (3%)
Strand=Plus/Minus
Query 243873 AGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATG 243931
||| |||||| ||||| |||||||| ||||| |||| || || ||||| | ||||
Sbjct 2206 AGATGTTGAGCGACTGCGACTGGTCGATGAAGG-CGCCGCGATCGGCGGCGAGATCGATG 2148
Query 243932 AGGTCCTTCTGA--GATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGA 243989
||| ||| ||| || || ||| |||||||||| | |||||||| |||||||
Sbjct 2147 AGGCAGCGCTGCTTGATCTCCCAGACG--GTCTTGTAGAGCGCCTTGAGGTCGTCGGGGA 2090
Query 243990 ACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGT 244049
| | | ||||||||||||||| || | | |||| |||| |||| ||| |
Sbjct 2089 TGGCGCCAACGTTCTGCACCGAGCCGCGGTCGGCCATGATCTGGTTGCGGATGGCCGGGG 2030
Query 244050 TCCACAGGCC-CAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCT 244108
|||| || || | | | | || ||| || |||||| |||| || ||| |||||
Sbjct 2029 TCCAGAGACCGCGCGAGATG-AGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCG 1971
Query 244109 CCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTG 244168
|| | || ||||||||| ||| | ||||||| ||| ||||| | | ||| ||||
Sbjct 1970 CCAGCGAGGACGCGGCGCGAGTACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTG 1911
Query 244169 CCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACG 244228
|| || ||||||| || || || |||||||||| |||||||| ||| | |||
Sbjct 1910 CCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACA 1851
Query 244229 CCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC--- 244285
|||||| | || ||| | | ||| | ||||||||| ||| ||| |||
Sbjct 1850 CCGTGCTGCATGACGCGCTGACGCAGCGTCTCCCAGTCCCA---GCC---GAGCTCCGGG 1797
Query 244286 TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCG 244345
| | | || | ||| | ||| ||||| | | |||| ||| | ||| ||
Sbjct 1796 TTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGCCCTCGCTCATGGGCGACCCGGAA 1737
Query 244346 TAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAG 244405
||||| |||| || || || ||| ||||||| || || | |||| | ||
Sbjct 1736 AAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCGCACGAGGCGGTGCAGGCGCCAAAG 1677
Query 244406 TAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATG 244465
||||||||||||||||| ||| | | |||||||| || ||||||| |
Sbjct 1676 TAGATGGTCTCGAAGATGTCGCGGTTGAGCTTGCGGGCCTCCGGGCTCTCAAAGGGGAAG 1617
Query 244466 CCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGC 244525
| || | ||||| | | ||| || ||||| ||||| ||||||||||| | ||| |||
Sbjct 1616 CGCAGCTCCATGAGCGCATTGGCGAGGCCCTGAACGCCAATGCCGATGGGGCGGTGGCGC 1557
Query 244526 TTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGG 244585
||||| |||| ||| || |||||||| |||||||||||||| || |||||||
Sbjct 1556 GTGTTGCTGCGCTCGGCCTCCTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGG 1497
Query 244586 TTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCC 244645
|| ||||| | | ||| ||| || ||| |||||||| || ||
Sbjct 1496 TTCTTGGTGACGACCTTGGTGACATCGTAGAGGGCCTGGAAGTCGTA------GGTGCCC 1443
Query 244646 TCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCC 244705
|| | ||| ||| | |||| | ||| || | ||| ||||||||||||||
Sbjct 1442 TCCTCAATGTTGA------CGAACTTGCGCAGGTTGATGGAGGCGAGGTTGCAGACGGCG 1389
Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765
||||| || | | | ||||| || ||||||||||| ||||| | |||||||| ||
Sbjct 1388 ACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGATG 1329
Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825
|| |||| || || || |||||| |||||||||||||||| |||||||||| ||| |
Sbjct 1328 CCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCACG 1269
Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885
|||||||||| |||| | |||| || |||||||||| || | ||| ||
Sbjct 1268 CCGGTCTCGATCTGGCAGCTCAGGATCTGGTACCAGAGGTCCTGGGCGCGCATGGTCTTG 1209
Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945
|| | |||||| ||||||||| ||| || ||| ||||||| ||| ||||
Sbjct 1208 CGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACA 1149
Query 244946 TCGTCTAGGCC--GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGA 245003
|| ||||| || | || |||||| | ||| |||| || | | ||| ||
Sbjct 1148 TCCGAGAGGCCCTTGGCCTCG--TTCGGGCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGA 1091
Query 245004 CCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCT 245063
| | |||||| || |||||||||| ||||||||| | ||||||||| | || | ||
Sbjct 1090 CACGCTGCATAAAAAGGTCGGGGACCCAGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCT 1031
Query 245064 CGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCT 245123
| ||| ||| |||||| | ||||| | ||||| ||||||| ||||||| ||||
Sbjct 1030 CCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAAGTCCTCGACGTCGGCGTGCCAAGGCT 971
Query 245124 CCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGA 245183
| | ||| | |||| || ||| |||||| ||| |||||||||| | | ||
Sbjct 970 CGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCA----CGTAGCGG 915
Query 245184 GCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCC 245239
||| ||||||||| ||| || ||||||| |||||||| || ||||||||||||||
Sbjct 914 GCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCGACTGGCCGTTGGTGCCG 855
Query 245240 TTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGC 245299
|| |||| |||| | | | || |||| |||| | ||| | |||||||||| |
Sbjct 854 GCGACGTAGCTGCCCGAGGCGCGGATGTTGTGGATGTTGACGCCGATGCCGCCGGCGTAC 795
Query 245300 TTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG--CTATGCCCTCCATGCTGTCCGACT 245357
||||||||| | |||||| ||| || | ||||| |||||||| || ||| ||
Sbjct 794 TTGGAGATGCGCGCGCAGGTCTCGA--GCGTCTGGAAGATGCCCTCGATCGAGTCGTCCT 737
Query 245358 TCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAG 245417
|||||| | || |||||| |||| || || |||| ||| | |||||| || |
Sbjct 736 TCATGTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGG 677
Query 245418 TGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCG 245476
| || ||||||| || ||| | | || ||| | | |||| |||| || | |||
Sbjct 676 TCGGCGTGGCGTGCGTGAAG-AACTTCTGCGACATCATGTCGTAGGTCTCGA-TGGCGCG 619
Query 245477 -TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCT 245534
||||||| || |||||| | || | | |||||| ||||||| ||||| ||
Sbjct 618 ATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATGAGCATGTGCTGCGGGCG-CT 560
Query 245535 CGATGGGTCCCTCGGGTC--CCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAA 245592
|| | | | | ||| ||||||||| ||| |||||||||||||||||||| || ||
Sbjct 559 CG--GCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCGAA 502
Query 245593 GTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTCGGCG-TGCT 245651
| | ||| | |||||| || || | ||||||| |||||||| | ||| | ||
Sbjct 501 GAAGTCGTACTCGAAGTCGCGGTCGTACTTGACGGCCGCGTCGAGGCGCTCCTTGTTGGC 442
Query 245652 TCTGACTGACCTCGTAAAACTTTTGCGCTATGAGGGGAGCCCTGAGCCCGGTGTCCGGAT 245711
||| ||| ||||| | | | || |||||||| ||| | ||| || ||| |
Sbjct 441 CATGA-TGATGTCGTAGACATCCTCGGCGATGAGGGGTGCCTTCTCGCCGTTGCGCGGGT 383
Query 245712 TGACGTTGAACCAGAGCCTCTTGCACACCTCCGAGAACTTGGGGCTGGTGAGCTTATGCA 245771
|| || ||| | |||| || || | ||| ||||| | ||| ||| ||| ||||
Sbjct 382 GGATGTGGAAGCGGAGCTTCGTGGCCGTCTCGGAGAAGGAGTCGCTCGTGCTCTTGTGCA 323
Query 245772 GGTTGGTGACTGCTATGCGCGCCGCCAACTTGCTGTAGTCGGGGTGAGTGGTGGTCATGT 245831
||||| | || | ||||| || |||| ||||| |||| ||||| ||||| ||
Sbjct 322 GGTTGCTCACGGAGATGCGGGCGGCCAGGATGCTGAAGTCCGGGTGCTGGGTGGCGGCGT 263
Query 245832 TGGAGGCCGTGTGGGCCAGCAGCTCGTCAATCTC 245865
| |||||| | ||| |||||||| | |||
Sbjct 262 ACGCGGCCGTCTCGGCGGCGAGCTCGTCGAGCTC 229
>seq236
Length=1170
Score = 322 bits (356), Expect = 9e-83
Identities = 596/868 (69%), Gaps = 21/868 (2%)
Strand=Plus/Plus
Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343
|||| ||||||||||||||||| | ||||||||||| || ||| |||||| ||
Sbjct 252 GATCCAGCACCAGGACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGGACGGC 311
Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403
||||||||| ||||||| | ||||| | | || || ||| || | || ||| |
Sbjct 312 CGAGGAGATGGACCTGGGCCAGGACCAGAAGGACTTTGACTCAATGACCAAGGGCGAGCA 371
Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463
| || |||| || | |||||||||||||| |||| |||||||| || |||||
Sbjct 372 GCACTTTGTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTGCTCGAGAA 431
Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGC 42521
| | | | | || | |||||| || || ||||| |||||||||||||||
Sbjct 432 CGTCGTCGAGAACTTTTGCAGCGAGGTG-AGC-CTGCCCGAGGCTCGCTGCTTCTACGGC 489
Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581
|||||||| ||||| |||||| | ||||| ||||||||| | || || |||| |||
Sbjct 490 TTCCAGATGGCCATCGAGAACATCCACTCCGAGGTGTACTCGCTCCTTATCGACACCTAC 549
Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641
|| | || | ||| ||| || ||||| ||| | || ||| |||||||| |
Sbjct 550 ATTCGCGACAGCAGGGAGAAGGCCGGCCTCTTCAACGCCCTCGACACGCTGCCCTGCGTG 609
Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701
| |||||| | ||||| | || || || | | | || || | ||||
Sbjct 610 CGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCACCTTTGCCGAG 669
Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761
| || || | ||| | ||||||||||||||||||||||||||| |||| | |||||
Sbjct 670 CGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATC 729
Query 42762 TTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820
|||||||||||| || || || ||||| || ||||||||||| || || | |||||
Sbjct 730 TTCTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGTCTCACCTTCTCCAATGAGATGATCAG 788
Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880
| | |||||||| |||| | |||||||| ||||| || ||| || | |||| |
Sbjct 789 CCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCTCTTC---CGCAAGCTCATCAA 845
Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940
| |||| ||| || || | | ||||||| | ||||| ||||||||| ||
Sbjct 846 CCCGCCCAGCGAGGCCCGCGTGCACGAGATCATCAAGTCCGCCGTCGAGATCGAGTGCGA 905
Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000
||| || || | |||| ||||| || | ||||||||| | ||||||| |
Sbjct 906 CTTCATCTCGGACGCGCTCCCCGTCGAGCTCATTGGCATGAACTCCAGCCTCATGCAGCA 965
Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCG------CCT 43054
||||||| ||| |||||| |||| ||| | | || |||| || | | |
Sbjct 966 GTACATCAAGTTCGTCGCGGACCGCCTCGT------CAAGGCTCTCGGCTGCAAGGCCAT 1019
Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114
|||| | || | |||||| |||| ||||| ||||| || |||||||||||||
Sbjct 1020 CTACGGCGTGCAGAACCCCTTTGACTGGATGGACCTGATCTCCATGCAGGGCAAGACCAA 1079
Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTAC 43142
||||||||| |||||||||| ||| |||
Sbjct 1080 CTTTTTCGAAAAGCGCGTCGGCGAGTAC 1107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944212139160640
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