Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5216 596 3e-165 seq236 322 9e-83 >seq5216 Length=2424 Score = 596 bits (660), Expect = 3e-165 Identities = 1356/2014 (67%), Gaps = 57/2014 (3%) Strand=Plus/Minus Query 243873 AGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATG 243931 ||| |||||| ||||| |||||||| ||||| |||| || || ||||| | |||| Sbjct 2206 AGATGTTGAGCGACTGCGACTGGTCGATGAAGG-CGCCGCGATCGGCGGCGAGATCGATG 2148 Query 243932 AGGTCCTTCTGA--GATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGA 243989 ||| ||| ||| || || ||| |||||||||| | |||||||| ||||||| Sbjct 2147 AGGCAGCGCTGCTTGATCTCCCAGACG--GTCTTGTAGAGCGCCTTGAGGTCGTCGGGGA 2090 Query 243990 ACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGT 244049 | | | ||||||||||||||| || | | |||| |||| |||| ||| | Sbjct 2089 TGGCGCCAACGTTCTGCACCGAGCCGCGGTCGGCCATGATCTGGTTGCGGATGGCCGGGG 2030 Query 244050 TCCACAGGCC-CAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCT 244108 |||| || || | | | | || ||| || |||||| |||| || ||| ||||| Sbjct 2029 TCCAGAGACCGCGCGAGATG-AGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCG 1971 Query 244109 CCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTG 244168 || | || ||||||||| ||| | ||||||| ||| ||||| | | ||| |||| Sbjct 1970 CCAGCGAGGACGCGGCGCGAGTACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTG 1911 Query 244169 CCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACG 244228 || || ||||||| || || || |||||||||| |||||||| ||| | ||| Sbjct 1910 CCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACA 1851 Query 244229 CCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC--- 244285 |||||| | || ||| | | ||| | ||||||||| ||| ||| ||| Sbjct 1850 CCGTGCTGCATGACGCGCTGACGCAGCGTCTCCCAGTCCCA---GCC---GAGCTCCGGG 1797 Query 244286 TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCG 244345 | | | || | ||| | ||| ||||| | | |||| ||| | ||| || Sbjct 1796 TTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGCCCTCGCTCATGGGCGACCCGGAA 1737 Query 244346 TAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAG 244405 ||||| |||| || || || ||| ||||||| || || | |||| | || Sbjct 1736 AAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCGCACGAGGCGGTGCAGGCGCCAAAG 1677 Query 244406 TAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATG 244465 ||||||||||||||||| ||| | | |||||||| || ||||||| | Sbjct 1676 TAGATGGTCTCGAAGATGTCGCGGTTGAGCTTGCGGGCCTCCGGGCTCTCAAAGGGGAAG 1617 Query 244466 CCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGC 244525 | || | ||||| | | ||| || ||||| ||||| ||||||||||| | ||| ||| Sbjct 1616 CGCAGCTCCATGAGCGCATTGGCGAGGCCCTGAACGCCAATGCCGATGGGGCGGTGGCGC 1557 Query 244526 TTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGG 244585 ||||| |||| ||| || |||||||| |||||||||||||| || ||||||| Sbjct 1556 GTGTTGCTGCGCTCGGCCTCCTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGG 1497 Query 244586 TTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCC 244645 || ||||| | | ||| ||| || ||| |||||||| || || Sbjct 1496 TTCTTGGTGACGACCTTGGTGACATCGTAGAGGGCCTGGAAGTCGTA------GGTGCCC 1443 Query 244646 TCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCC 244705 || | ||| ||| | |||| | ||| || | ||| |||||||||||||| Sbjct 1442 TCCTCAATGTTGA------CGAACTTGCGCAGGTTGATGGAGGCGAGGTTGCAGACGGCG 1389 Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | | | ||||| || ||||||||||| ||||| | |||||||| || Sbjct 1388 ACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGATG 1329 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 || |||| || || || |||||| |||||||||||||||| |||||||||| ||| | Sbjct 1328 CCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCACG 1269 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885 |||||||||| |||| | |||| || |||||||||| || | ||| || Sbjct 1268 CCGGTCTCGATCTGGCAGCTCAGGATCTGGTACCAGAGGTCCTGGGCGCGCATGGTCTTG 1209 Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 || | |||||| ||||||||| ||| || ||| ||||||| ||| |||| Sbjct 1208 CGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACA 1149 Query 244946 TCGTCTAGGCC--GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGA 245003 || ||||| || | || |||||| | ||| |||| || | | ||| || Sbjct 1148 TCCGAGAGGCCCTTGGCCTCG--TTCGGGCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGA 1091 Query 245004 CCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCT 245063 | | |||||| || |||||||||| ||||||||| | ||||||||| | || | || Sbjct 1090 CACGCTGCATAAAAAGGTCGGGGACCCAGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCT 1031 Query 245064 CGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCT 245123 | ||| ||| |||||| | ||||| | ||||| ||||||| ||||||| |||| Sbjct 1030 CCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAAGTCCTCGACGTCGGCGTGCCAAGGCT 971 Query 245124 CCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGA 245183 | | ||| | |||| || ||| |||||| ||| |||||||||| | | || Sbjct 970 CGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCA----CGTAGCGG 915 Query 245184 GCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCC 245239 ||| ||||||||| ||| || ||||||| |||||||| || |||||||||||||| Sbjct 914 GCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCGACTGGCCGTTGGTGCCG 855 Query 245240 TTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGC 245299 || |||| |||| | | | || |||| |||| | ||| | |||||||||| | Sbjct 854 GCGACGTAGCTGCCCGAGGCGCGGATGTTGTGGATGTTGACGCCGATGCCGCCGGCGTAC 795 Query 245300 TTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG--CTATGCCCTCCATGCTGTCCGACT 245357 ||||||||| | |||||| ||| || | ||||| |||||||| || ||| || Sbjct 794 TTGGAGATGCGCGCGCAGGTCTCGA--GCGTCTGGAAGATGCCCTCGATCGAGTCGTCCT 737 Query 245358 TCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAG 245417 |||||| | || |||||| |||| || || |||| ||| | |||||| || | Sbjct 736 TCATGTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGG 677 Query 245418 TGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCG 245476 | || ||||||| || ||| | | || ||| | | |||| |||| || | ||| Sbjct 676 TCGGCGTGGCGTGCGTGAAG-AACTTCTGCGACATCATGTCGTAGGTCTCGA-TGGCGCG 619 Query 245477 -TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCT 245534 ||||||| || |||||| | || | | |||||| ||||||| ||||| || Sbjct 618 ATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATGAGCATGTGCTGCGGGCG-CT 560 Query 245535 CGATGGGTCCCTCGGGTC--CCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAA 245592 || | | | | ||| ||||||||| ||| |||||||||||||||||||| || || Sbjct 559 CG--GCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCGAA 502 Query 245593 GTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTCGGCG-TGCT 245651 | | ||| | |||||| || || | ||||||| |||||||| | ||| | || Sbjct 501 GAAGTCGTACTCGAAGTCGCGGTCGTACTTGACGGCCGCGTCGAGGCGCTCCTTGTTGGC 442 Query 245652 TCTGACTGACCTCGTAAAACTTTTGCGCTATGAGGGGAGCCCTGAGCCCGGTGTCCGGAT 245711 ||| ||| ||||| | | | || |||||||| ||| | ||| || ||| | Sbjct 441 CATGA-TGATGTCGTAGACATCCTCGGCGATGAGGGGTGCCTTCTCGCCGTTGCGCGGGT 383 Query 245712 TGACGTTGAACCAGAGCCTCTTGCACACCTCCGAGAACTTGGGGCTGGTGAGCTTATGCA 245771 || || ||| | |||| || || | ||| ||||| | ||| ||| ||| |||| Sbjct 382 GGATGTGGAAGCGGAGCTTCGTGGCCGTCTCGGAGAAGGAGTCGCTCGTGCTCTTGTGCA 323 Query 245772 GGTTGGTGACTGCTATGCGCGCCGCCAACTTGCTGTAGTCGGGGTGAGTGGTGGTCATGT 245831 ||||| | || | ||||| || |||| ||||| |||| ||||| ||||| || Sbjct 322 GGTTGCTCACGGAGATGCGGGCGGCCAGGATGCTGAAGTCCGGGTGCTGGGTGGCGGCGT 263 Query 245832 TGGAGGCCGTGTGGGCCAGCAGCTCGTCAATCTC 245865 | |||||| | ||| |||||||| | ||| Sbjct 262 ACGCGGCCGTCTCGGCGGCGAGCTCGTCGAGCTC 229 >seq236 Length=1170 Score = 322 bits (356), Expect = 9e-83 Identities = 596/868 (69%), Gaps = 21/868 (2%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| ||||||||||||||||| | ||||||||||| || ||| |||||| || Sbjct 252 GATCCAGCACCAGGACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGGACGGC 311 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||||| ||||||| | ||||| | | || || ||| || | || ||| | Sbjct 312 CGAGGAGATGGACCTGGGCCAGGACCAGAAGGACTTTGACTCAATGACCAAGGGCGAGCA 371 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 | || |||| || | |||||||||||||| |||| |||||||| || ||||| Sbjct 372 GCACTTTGTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTGCTCGAGAA 431 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGC 42521 | | | | | || | |||||| || || ||||| ||||||||||||||| Sbjct 432 CGTCGTCGAGAACTTTTGCAGCGAGGTG-AGC-CTGCCCGAGGCTCGCTGCTTCTACGGC 489 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| ||||| |||||| | ||||| ||||||||| | || || |||| ||| Sbjct 490 TTCCAGATGGCCATCGAGAACATCCACTCCGAGGTGTACTCGCTCCTTATCGACACCTAC 549 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 || | || | ||| ||| || ||||| ||| | || ||| |||||||| | Sbjct 550 ATTCGCGACAGCAGGGAGAAGGCCGGCCTCTTCAACGCCCTCGACACGCTGCCCTGCGTG 609 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 | |||||| | ||||| | || || || | | | || || | |||| Sbjct 610 CGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCACCTTTGCCGAG 669 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | || || | ||| | ||||||||||||||||||||||||||| |||| | ||||| Sbjct 670 CGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATC 729 Query 42762 TTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 |||||||||||| || || || ||||| || ||||||||||| || || | ||||| Sbjct 730 TTCTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGTCTCACCTTCTCCAATGAGATGATCAG 788 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | | |||||||| |||| | |||||||| ||||| || ||| || | |||| | Sbjct 789 CCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCTCTTC---CGCAAGCTCATCAA 845 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 | |||| ||| || || | | ||||||| | ||||| ||||||||| || Sbjct 846 CCCGCCCAGCGAGGCCCGCGTGCACGAGATCATCAAGTCCGCCGTCGAGATCGAGTGCGA 905 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 ||| || || | |||| ||||| || | ||||||||| | ||||||| | Sbjct 906 CTTCATCTCGGACGCGCTCCCCGTCGAGCTCATTGGCATGAACTCCAGCCTCATGCAGCA 965 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCG------CCT 43054 ||||||| ||| |||||| |||| ||| | | || |||| || | | | Sbjct 966 GTACATCAAGTTCGTCGCGGACCGCCTCGT------CAAGGCTCTCGGCTGCAAGGCCAT 1019 Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114 |||| | || | |||||| |||| ||||| ||||| || ||||||||||||| Sbjct 1020 CTACGGCGTGCAGAACCCCTTTGACTGGATGGACCTGATCTCCATGCAGGGCAAGACCAA 1079 Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||||||| |||||||||| ||| ||| Sbjct 1080 CTTTTTCGAAAAGCGCGTCGGCGAGTAC 1107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944212139160640