Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7460 116 3e-21 >seq7460 Length=1425 Score = 116 bits (128), Expect = 3e-21 Identities = 373/576 (65%), Gaps = 2/576 (0%) Strand=Plus/Minus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 || ||||| | || ||||||| |||||| || || | ||| || ||||||||| Sbjct 1277 AGGGGCTCGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTCCCCG 1218 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 | | || || || | || |||| || || | || | || ||||||||| Sbjct 1217 GCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTG 1158 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 || || || |||| || ||||| ||||||| ||| |||| || || || ||||| || Sbjct 1157 AAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCC 1098 Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410 | | || ||||| || |||| ||| |||||||| || ||||| | || || Sbjct 1097 TTGGACACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCC 1038 Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 ||||||||||| || | | || || | | || ||| || |||| || | | Sbjct 1037 GCCGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGC 978 Query 20471 ACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTAC 20530 |||| | || | ||||| | |||||||| | || || | | | | | |||| Sbjct 977 ACAAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGTAC 918 Query 20531 GCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTG 20590 | || |||||||| | ||||||||| |||||||| || || | ||| |||||| | Sbjct 917 TCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGA 858 Query 20591 TGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA-C 20649 | || |||||| | | | ||| || | | ||| || || |||||| || | | Sbjct 857 TCCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATG 798 Query 20650 TCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTG 20709 |||| ||| || ||| | ||| | || ||| | ||||| ||||| || | Sbjct 797 TCCTTTTCCTG-CAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTC 739 Query 20710 CACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAG 20745 | ||||| |||||||| || ||||| || || || Sbjct 738 GGCGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAG 703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441313413289760