Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq7460 116 3e-21
>seq7460
Length=1425
Score = 116 bits (128), Expect = 3e-21
Identities = 373/576 (65%), Gaps = 2/576 (0%)
Strand=Plus/Minus
Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230
|| ||||| | || ||||||| |||||| || || | ||| || |||||||||
Sbjct 1277 AGGGGCTCGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTCCCCG 1218
Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290
| | || || || | || |||| || || | || | || |||||||||
Sbjct 1217 GCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTG 1158
Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350
|| || || |||| || ||||| ||||||| ||| |||| || || || ||||| ||
Sbjct 1157 AAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCC 1098
Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410
| | || ||||| || |||| ||| |||||||| || ||||| | || ||
Sbjct 1097 TTGGACACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCC 1038
Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470
||||||||||| || | | || || | | || ||| || |||| || | |
Sbjct 1037 GCCGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGC 978
Query 20471 ACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTAC 20530
|||| | || | ||||| | |||||||| | || || | | | | | ||||
Sbjct 977 ACAAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGTAC 918
Query 20531 GCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTG 20590
| || |||||||| | ||||||||| |||||||| || || | ||| |||||| |
Sbjct 917 TCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGA 858
Query 20591 TGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA-C 20649
| || |||||| | | | ||| || | | ||| || || |||||| || | |
Sbjct 857 TCCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATG 798
Query 20650 TCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTG 20709
|||| ||| || ||| | ||| | || ||| | ||||| ||||| || |
Sbjct 797 TCCTTTTCCTG-CAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTC 739
Query 20710 CACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAG 20745
| ||||| |||||||| || ||||| || || ||
Sbjct 738 GGCGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAG 703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441313413289760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |