Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 152 1e-31
seq8082 131 4e-25
seq5348 116 9e-21
seq6412 93.3 1e-13
seq10072 86.0 1e-11
>seq7528
Length=2088
Score = 152 bits (168), Expect = 1e-31
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 288245 GTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGG 288304
|||||||||| || | ||| ||||| || | ||| || || ||||| || ||||||
Sbjct 1141 GTCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 1082
Query 288305 CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364
||||||||| ||||| || | || || || |||||||| |||||||||||| | |
Sbjct 1081 TGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGG 1022
Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424
|||| || || || |||||||| ||| |||||||| || || | || | || |
Sbjct 1021 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGA 962
Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || ||||| ||||||||||| || ||||||||||| ||||||||
Sbjct 961 CATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913
Score = 145 bits (160), Expect = 2e-29
Identities = 172/232 (74%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| || | || ||||| || | ||| || || ||||| || ||||
Sbjct 915 CATG-CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 857
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| ||||||||| |||||||| | || || || |||||||| |||||||||||| |
Sbjct 856 CACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAG 797
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || || |||||||| ||| |||||||| || || | || | |
Sbjct 796 GGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCT 737
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||||||||| || ||||||||||| ||||||||
Sbjct 736 CGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 685
Score = 136 bits (150), Expect = 9e-27
Identities = 170/232 (73%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| || | || || || || | ||| || || ||||| || ||||
Sbjct 231 CATG-CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 173
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|| ||||||||| |||||||| | || || || ||||| || |||||||||||| |
Sbjct 172 CGCTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAG 113
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || || |||||||| ||| ||||| || || || | || | |
Sbjct 112 GGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCT 53
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || ||||||||||| ||||| ||||| || |||||||| || ||||||||
Sbjct 52 CGACATCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
>seq8082
Length=462
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| |||||||| | || ||||| || | ||| || || ||||| || |||||| |
Sbjct 227 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | || || || |||||||| || ||||||||| | |||
Sbjct 167 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 108
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | |||||||| || || | || | || ||
Sbjct 107 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACA 48
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| || || || ||||||||||| ||||||||
Sbjct 47 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1
>seq5348
Length=435
Score = 116 bits (128), Expect = 9e-21
Identities = 160/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | || ||||| || | ||| || || ||||| || || ||| |
Sbjct 275 CCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTG 216
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | || || || |||||||| || ||||||||| | |||
Sbjct 215 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGG 156
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || ||| |||||||| || || | || | || ||
Sbjct 155 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 96
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470
||||| ||||| ||||| || || || ||||| || || |||||
Sbjct 95 TCGAGGGTGATAGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 52
>seq6412
Length=4986
Score = 93.3 bits (102), Expect = 1e-13
Identities = 244/367 (66%), Gaps = 4/367 (1%)
Strand=Plus/Minus
Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023
||||| ||||||||||| || || ||| || || | | || || || | ||
Sbjct 2078 ACGATGGGCGTGATGAAGACCTGCAGGAAGCCGGGCACCTTGAGCAGCGAGGGCCAGAAG 2019
Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083
|||| ||||||||||| || || |||||| | || || ||| || |||
Sbjct 2018 TGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTGCGAGCCATCGTGGTCCTGATCAGTC 1959
Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 326143
|||||||| | || ||||| || || ||||| ||| || || | ||
Sbjct 1958 ATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGTGTCGGCGTAAGTCTTGCCCGGCTGG 1899
Query 326144 AGGCCGAGAATTTGTTTGAGCG-CTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-G 326201
||||| | || | ||| ||| |||||| ||||||||| |||| || ||| | |
Sbjct 1898 AGGCCCATGATCTTCATGATATTCTG-GATTTCCTCGTTCTTCATGAT-CTGGCCGTGCG 1841
Query 326202 ATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGAC 326261
| || ||||||||||| | || || ||||| | || || || || || | ||||| |
Sbjct 1840 AGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAAGGGAAAGACGCCGTAGTTGTCGCGGC 1781
Query 326262 CGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGA 326321
|||| ||| ||||| ||| || || ||| |||||| || ||||| || || ||||
Sbjct 1780 CGACGACGCTGAGCCCGCTGATGGCGAGCGTCTTTGCGGAGTCACCCTCGGTGAGGATGA 1721
Query 326322 GAGTGCA 326328
|||||||
Sbjct 1720 GAGTGCA 1714
>seq10072
Length=3483
Score = 86.0 bits (94), Expect = 1e-11
Identities = 211/315 (67%), Gaps = 9/315 (3%)
Strand=Plus/Minus
Query 325343 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACA--ACCAGTTGATGT 325400
||||| |||||||||| || || |||||||||||| || ||| | | | || |
Sbjct 2324 TCCTTGCCACCCTGCAGTCGCGTGCCGAACTGGCCCGAGGGGTACAGGAGCGG--GAGAT 2267
Query 325401 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA-TGCTTCG 325459
| ||||| || ||| | ||||| || | ||| |||||| |||||| ||| ||
Sbjct 2266 TGTTGCTGCCCACAAAGTCCTGCGCCATGTTGGTGATGGTGGAGGTCAGAGACTGC-TCA 2208
Query 325460 CCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC- 325518
|| ||||| |||||| | ||||| | || ||| || ||| || ||||| | ||
Sbjct 2207 CCGTGGTGGTAGGCGGTCTGCTCGCCGACAACGCCGGCGAGCTGGGCCACCTTGAGCTCT 2148
Query 325519 --GGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAA 325576
|| | | |||||||| | || | | | | || || || || || |||||||
Sbjct 2147 GAGGACACGAGGTTGCGCTTAAGCGCGGCAAAGAGGACCTTGCGCTGCGAGGGTTTGAGG 2088
Query 325577 CCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCC 325636
|| |||| | ||||||| | ||| || |||| |||| | | || || | || || ||
Sbjct 2087 CCGTCAATGCCCGACGGGACGCTGCGCCCCAGGTCGTGCTGGGAAAAGAGAACGAGCTCT 2028
Query 325637 TTGTCGATGAAGTCG 325651
|| | || |||||||
Sbjct 2027 TTATTGACGAAGTCG 2013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179491709437992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |