Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7528 152 1e-31 seq8082 131 4e-25 seq5348 116 9e-21 seq6412 93.3 1e-13 seq10072 86.0 1e-11 >seq7528 Length=2088 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288245 GTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGG 288304 |||||||||| || | ||| ||||| || | ||| || || ||||| || |||||| Sbjct 1141 GTCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 1082 Query 288305 CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364 ||||||||| ||||| || | || || || |||||||| |||||||||||| | | Sbjct 1081 TGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGG 1022 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 |||| || || || |||||||| ||| |||||||| || || | || | || | Sbjct 1021 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGA 962 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct 961 CATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || ||||| || | ||| || || ||||| || |||| Sbjct 915 CATG-CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 857 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||||||| |||||||| | || || || |||||||| |||||||||||| | Sbjct 856 CACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAG 797 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| ||| |||||||| || || | || | | Sbjct 796 GGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCT 737 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct 736 CGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 685 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || || | ||| || || ||||| || |||| Sbjct 231 CATG-CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 173 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||||||| |||||||| | || || || ||||| || |||||||||||| | Sbjct 172 CGCTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAG 113 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| ||| ||||| || || || | || | | Sbjct 112 GGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCT 53 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||| ||||| ||||| || |||||||| || |||||||| Sbjct 52 CGACATCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1 >seq8082 Length=462 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| || | ||| || || ||||| || |||||| | Sbjct 227 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| || ||||||||| | ||| Sbjct 167 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 108 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | |||||||| || || | || | || || Sbjct 107 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACA 48 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 47 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1 >seq5348 Length=435 Score = 116 bits (128), Expect = 9e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | ||| || || ||||| || || ||| | Sbjct 275 CCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTG 216 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| || ||||||||| | ||| Sbjct 215 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGG 156 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||| |||||||| || || | || | || || Sbjct 155 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 96 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 ||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 95 TCGAGGGTGATAGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 52 >seq6412 Length=4986 Score = 93.3 bits (102), Expect = 1e-13 Identities = 244/367 (66%), Gaps = 4/367 (1%) Strand=Plus/Minus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 ||||| ||||||||||| || || ||| || || | | || || || | || Sbjct 2078 ACGATGGGCGTGATGAAGACCTGCAGGAAGCCGGGCACCTTGAGCAGCGAGGGCCAGAAG 2019 Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083 |||| ||||||||||| || || |||||| | || || ||| || ||| Sbjct 2018 TGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTGCGAGCCATCGTGGTCCTGATCAGTC 1959 Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 326143 |||||||| | || ||||| || || ||||| ||| || || | || Sbjct 1958 ATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGTGTCGGCGTAAGTCTTGCCCGGCTGG 1899 Query 326144 AGGCCGAGAATTTGTTTGAGCG-CTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-G 326201 ||||| | || | ||| ||| |||||| ||||||||| |||| || ||| | | Sbjct 1898 AGGCCCATGATCTTCATGATATTCTG-GATTTCCTCGTTCTTCATGAT-CTGGCCGTGCG 1841 Query 326202 ATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGAC 326261 | || ||||||||||| | || || ||||| | || || || || || | ||||| | Sbjct 1840 AGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAAGGGAAAGACGCCGTAGTTGTCGCGGC 1781 Query 326262 CGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGA 326321 |||| ||| ||||| ||| || || ||| |||||| || ||||| || || |||| Sbjct 1780 CGACGACGCTGAGCCCGCTGATGGCGAGCGTCTTTGCGGAGTCACCCTCGGTGAGGATGA 1721 Query 326322 GAGTGCA 326328 ||||||| Sbjct 1720 GAGTGCA 1714 >seq10072 Length=3483 Score = 86.0 bits (94), Expect = 1e-11 Identities = 211/315 (67%), Gaps = 9/315 (3%) Strand=Plus/Minus Query 325343 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACA--ACCAGTTGATGT 325400 ||||| |||||||||| || || |||||||||||| || ||| | | | || | Sbjct 2324 TCCTTGCCACCCTGCAGTCGCGTGCCGAACTGGCCCGAGGGGTACAGGAGCGG--GAGAT 2267 Query 325401 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA-TGCTTCG 325459 | ||||| || ||| | ||||| || | ||| |||||| |||||| ||| || Sbjct 2266 TGTTGCTGCCCACAAAGTCCTGCGCCATGTTGGTGATGGTGGAGGTCAGAGACTGC-TCA 2208 Query 325460 CCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC- 325518 || ||||| |||||| | ||||| | || ||| || ||| || ||||| | || Sbjct 2207 CCGTGGTGGTAGGCGGTCTGCTCGCCGACAACGCCGGCGAGCTGGGCCACCTTGAGCTCT 2148 Query 325519 --GGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAA 325576 || | | |||||||| | || | | | | || || || || || ||||||| Sbjct 2147 GAGGACACGAGGTTGCGCTTAAGCGCGGCAAAGAGGACCTTGCGCTGCGAGGGTTTGAGG 2088 Query 325577 CCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCC 325636 || |||| | ||||||| | ||| || |||| |||| | | || || | || || || Sbjct 2087 CCGTCAATGCCCGACGGGACGCTGCGCCCCAGGTCGTGCTGGGAAAAGAGAACGAGCTCT 2028 Query 325637 TTGTCGATGAAGTCG 325651 || | || ||||||| Sbjct 2027 TTATTGACGAAGTCG 2013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179491709437992