Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq10072 89.7 1e-12 seq6412 89.7 1e-12 >seq10072 Length=3483 Score = 89.7 bits (98), Expect = 1e-12 Identities = 228/342 (67%), Gaps = 9/342 (3%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||| || || || | ||||| ||||| |||||||||| || || ||||||||| Sbjct 2351 GTGAAGATGTAACGCGGGCTCGCAGCGTCCTTGCCACCCTGCAGTCGCGTGCCGAACTGG 2292 Query 297497 CCCTCCGGCAACA--ACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCA 297554 ||| || ||| | | | || || ||||| || ||| | ||||| || | ||| Sbjct 2291 CCCGAGGGGTACAGGAGCGG--GAGATTGTTGCTGCCCACAAAGTCCTGCGCCATGTTGG 2234 Query 297555 CGATGGTCCCTTGCAGAGA-TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAA 297613 |||||| |||||| ||| || || ||||| |||||| | ||||| | || Sbjct 2233 TGATGGTGGAGGTCAGAGACTGC-TCACCGTGGTGGTAGGCGGTCTGCTCGCCGACAACG 2175 Query 297614 CCGCTGAACTGTGCAACCTTCACGTC---GGTCGTCAAATTGCGCTTGAAAGCTGAATAT 297670 ||| || ||| || ||||| | || || | | |||||||| | || | | | Sbjct 2174 CCGGCGAGCTGGGCCACCTTGAGCTCTGAGGACACGAGGTTGCGCTTAAGCGCGGCAAAG 2115 Query 297671 ATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGA 297730 | || || || || || ||||||| || |||| | ||||||| | ||| || |||| Sbjct 2114 AGGACCTTGCGCTGCGAGGGTTTGAGGCCGTCAATGCCCGACGGGACGCTGCGCCCCAGG 2055 Query 297731 TCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCG 297772 |||| | | || || | || || || || | || ||||||| Sbjct 2054 TCGTGCTGGGAAAAGAGAACGAGCTCTTTATTGACGAAGTCG 2013 >seq6412 Length=4986 Score = 89.7 bits (98), Expect = 1e-12 Identities = 243/367 (66%), Gaps = 4/367 (1%) Strand=Plus/Minus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 ||||| ||||||||||| || || ||| || || | | || || || | || Sbjct 2078 ACGATGGGCGTGATGAAGACCTGCAGGAAGCCGGGCACCTTGAGCAGCGAGGGCCAGAAG 2019 Query 298145 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 298204 |||| ||||||||||| || || |||||| | || || ||| || ||| Sbjct 2018 TGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTGCGAGCCATCGTGGTCCTGATCAGTC 1959 Query 298205 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 298264 |||||||| | || ||||| || || ||||| ||| || || | || Sbjct 1958 ATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGTGTCGGCGTAAGTCTTGCCCGGCTGG 1899 Query 298265 AGGCCGAGAATTTGTTTGAGCG-CTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-G 298322 ||||| | || | ||| ||| |||||| ||||||||| |||| || ||| | | Sbjct 1898 AGGCCCATGATCTTCATGATATTCTG-GATTTCCTCGTTCTTCATGAT-CTGGCCGTGCG 1841 Query 298323 ATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGAC 298382 | || |||||||| || | || || ||||| | || || || || || | ||||| | Sbjct 1840 AGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAAGGGAAAGACGCCGTAGTTGTCGCGGC 1781 Query 298383 CGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGA 298442 |||| ||| ||||| ||| || || ||| |||||| || ||||| || || |||| Sbjct 1780 CGACGACGCTGAGCCCGCTGATGGCGAGCGTCTTTGCGGAGTCACCCTCGGTGAGGATGA 1721 Query 298443 GAGTGCA 298449 ||||||| Sbjct 1720 GAGTGCA 1714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102727897683400