Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq10072 89.7 1e-12
seq6412 89.7 1e-12
>seq10072
Length=3483
Score = 89.7 bits (98), Expect = 1e-12
Identities = 228/342 (67%), Gaps = 9/342 (3%)
Strand=Plus/Minus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
||||| || || || | ||||| ||||| |||||||||| || || |||||||||
Sbjct 2351 GTGAAGATGTAACGCGGGCTCGCAGCGTCCTTGCCACCCTGCAGTCGCGTGCCGAACTGG 2292
Query 297497 CCCTCCGGCAACA--ACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCA 297554
||| || ||| | | | || || ||||| || ||| | ||||| || | |||
Sbjct 2291 CCCGAGGGGTACAGGAGCGG--GAGATTGTTGCTGCCCACAAAGTCCTGCGCCATGTTGG 2234
Query 297555 CGATGGTCCCTTGCAGAGA-TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAA 297613
|||||| |||||| ||| || || ||||| |||||| | ||||| | ||
Sbjct 2233 TGATGGTGGAGGTCAGAGACTGC-TCACCGTGGTGGTAGGCGGTCTGCTCGCCGACAACG 2175
Query 297614 CCGCTGAACTGTGCAACCTTCACGTC---GGTCGTCAAATTGCGCTTGAAAGCTGAATAT 297670
||| || ||| || ||||| | || || | | |||||||| | || | | |
Sbjct 2174 CCGGCGAGCTGGGCCACCTTGAGCTCTGAGGACACGAGGTTGCGCTTAAGCGCGGCAAAG 2115
Query 297671 ATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGA 297730
| || || || || || ||||||| || |||| | ||||||| | ||| || ||||
Sbjct 2114 AGGACCTTGCGCTGCGAGGGTTTGAGGCCGTCAATGCCCGACGGGACGCTGCGCCCCAGG 2055
Query 297731 TCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCG 297772
|||| | | || || | || || || || | || |||||||
Sbjct 2054 TCGTGCTGGGAAAAGAGAACGAGCTCTTTATTGACGAAGTCG 2013
>seq6412
Length=4986
Score = 89.7 bits (98), Expect = 1e-12
Identities = 243/367 (66%), Gaps = 4/367 (1%)
Strand=Plus/Minus
Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144
||||| ||||||||||| || || ||| || || | | || || || | ||
Sbjct 2078 ACGATGGGCGTGATGAAGACCTGCAGGAAGCCGGGCACCTTGAGCAGCGAGGGCCAGAAG 2019
Query 298145 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 298204
|||| ||||||||||| || || |||||| | || || ||| || |||
Sbjct 2018 TGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTGCGAGCCATCGTGGTCCTGATCAGTC 1959
Query 298205 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 298264
|||||||| | || ||||| || || ||||| ||| || || | ||
Sbjct 1958 ATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGTGTCGGCGTAAGTCTTGCCCGGCTGG 1899
Query 298265 AGGCCGAGAATTTGTTTGAGCG-CTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-G 298322
||||| | || | ||| ||| |||||| ||||||||| |||| || ||| | |
Sbjct 1898 AGGCCCATGATCTTCATGATATTCTG-GATTTCCTCGTTCTTCATGAT-CTGGCCGTGCG 1841
Query 298323 ATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGAC 298382
| || |||||||| || | || || ||||| | || || || || || | ||||| |
Sbjct 1840 AGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAAGGGAAAGACGCCGTAGTTGTCGCGGC 1781
Query 298383 CGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGA 298442
|||| ||| ||||| ||| || || ||| |||||| || ||||| || || ||||
Sbjct 1780 CGACGACGCTGAGCCCGCTGATGGCGAGCGTCTTTGCGGAGTCACCCTCGGTGAGGATGA 1721
Query 298443 GAGTGCA 298449
|||||||
Sbjct 1720 GAGTGCA 1714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102727897683400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |