Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5216 226 3e-54 seq236 120 4e-22 seq6412 105 8e-18 >seq5216 Length=2424 Score = 226 bits (250), Expect = 3e-54 Identities = 1115/1747 (64%), Gaps = 57/1747 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || || ||||||| || |||||||| || ||||||| | || | || ||||| Sbjct 2294 CGCAGATAGTACAATCCGGTCTTGAGACCGCGCTTCCACGAGTAAAAGTGGCACGAGGTG 2235 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| || || | ||||| ||| ||| | || || || ||||||||| Sbjct 2234 AGCTTGCTGACGGTGGCGTCGGCCATGTAGATGTTGAGCGACTGCGACTGGTCGATGAAG 2175 Query 113717 CGTCCACGATCCGCCGCCATATCAATCA--CATCCTTCATCTTGATTTCCCACACAGTTC 113774 || ||||| || || | ||| || | || | | |||||| ||||| || || Sbjct 2174 GCGCCGCGATCGGCGGCGAGATCGATGAGGCAGCGCTG--CTTGATCTCCCAGACGGTCT 2117 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 ||||||| ||| | || || ||||| | | | || || | ||||| | | Sbjct 2116 TGTAGAGCGCCTTGAGGTCGTCGGGGATGGCGCCAACGTTCTGCACCGAGCCGCGGTC-- 2059 Query 113835 TGACCATGAGATCCTTC---ATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 113891 | |||||| | || || || | ||||||||| | |||| |||| | Sbjct 2058 -GGCCATGATCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGCGAGATGAGGTCCTTGA 2000 Query 113892 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 113951 || || | ||||| || ||||| || |||||| ||| | | || || ||| Sbjct 1999 GCAGGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCGCGAGTACATGTTGC 1940 Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCA 114011 | ||| | ||||||||| ||| ||| || | || || | ||| ||||| ||||||| Sbjct 1939 TGGTGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTCGAGGCCGTGGGCA 1880 Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGT 114071 |||| || | || || |||||| | ||| | | | | | ||| | || | | Sbjct 1879 TGGGCGCGACCAGCAGCGAGTTACGCACACCGTGCTGCATGACGCGCTGACGCAGCGTCT 1820 Query 114072 CCCAGTCGTAGTTGAGCT------TTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 114125 ||||||| || ||||| | | || | | | ||| | || ||||||| | | Sbjct 1819 CCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGC 1760 Query 114126 CTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG 114185 | | | ||||| || ||| |||| ||| |||||||| ||| ||||| ||| Sbjct 1759 CCTCGCTCATGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCGC 1700 Query 114186 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG-CGAGCATTCA--TTGCCT 114242 | || | ||| | || || ||||| || ||| || | || | |||| Sbjct 1699 ACGAGGCGGTGCAGGCGCCAAAGTAGATGGTCTCGAAGATGTCGCGG-TTGAGCTTGCG- 1642 Query 114243 TGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGA 114302 |||||| | ||||| | || || | || | ||| ||||| || || | Sbjct 1641 -GGCCTCCGGGCTCTCAAAGGGGAAGCGCAGCTCCATGAGCGCATTGGCGAGGCCCTGAA 1583 Query 114303 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGAT 114359 | || | ||| || ||||| || | | | || | || ||| |||| ||||| | Sbjct 1582 CGCCAATGCCGATGGGGCGGTGGCGCGTGTTGC---TGCGCTCGGCCTCCTCGACGGGGT 1526 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419 | || || | ||||| || | || || || |||||||| ||||| |||| || | | Sbjct 1525 AGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGTGACATCGTAGA 1466 Query 114420 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTG 114476 | | | | || | ||| ||| ||| ||||| |||| | ||| ||| | Sbjct 1465 GGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCGCAGGTTGATGG 1409 Query 114477 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 114536 | || || || || || | | ||| || | | |||||| || || || || |||| Sbjct 1408 AGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGTGCACA 1349 Query 114537 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || || ||| ||| |||| | |||||| || || ||||| ||| || || |||| Sbjct 1348 GGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCT 1289 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 114656 || | |||||| | ||| || ||||| | ||| | | || || | ||||| | Sbjct 1288 TGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTGGTACCAGAGGT 1229 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | ||| ||| || | | | || ||||||| |||||| |||||| | | Sbjct 1228 CCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAGAGCTCCT 1169 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAG-CCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 ||||| || || | | || ||||| |||| | |||| | ||||||||||| | | Sbjct 1168 TGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTG-GCCTCGTTCGGGCAGAAGAGGGTC 1110 Query 114776 CATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAG 114835 || | |||| ||||||| ||| || ||||| |||| |||||| || ||||| Sbjct 1109 CAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGGCGTAGAAG 1050 Query 114836 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 || || || ||| | || || | || || || || | ||| | |||||| | Sbjct 1049 AGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAAGTCCTCG 990 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCC 114952 | || |||||||| || || ||||||| |||| || ||||| || | || || Sbjct 989 ACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGCCC 930 Query 114953 TGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGAT 115012 |||| || || | || ||| | || || ||||||||||| || | || || | || Sbjct 929 TGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCGAC 870 Query 115013 TGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCATGGATGTGCATAC 115070 ||||| || || || ||| || | | | ||| | || | ||||||| | | Sbjct 869 TGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTGTGGATGTTGACGC 812 Query 115071 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC-TC-CGTGAGACTGCCGTAGATCCC 115128 | || || || || |||| ||||| ||||||| || || | | ||| | |||| || Sbjct 811 CGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTCTG--GAAGATGCC 754 Query 115129 GTCGATCGAGTCACCCTT-ATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 115187 ||||||||||| |||| || ||| | |||||||||||||||||||| || | || | Sbjct 753 CTCGATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGG 695 Query 115188 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCG 115246 | || |||||||||||||| || || ||||| |||| | || | || |||||| | ||| Sbjct 694 TGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCGACATCATGTCG 636 Query 115247 TAGGTCTCCAAGACGGCGGGA---ATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 |||||||| || |||| || ||||| | | ||| || |||| ||||| ||||| Sbjct 635 TAGGTCTC---GATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATG 579 Query 115304 AACATGT 115310 | ||||| Sbjct 578 AGCATGT 572 >seq236 Length=1170 Score = 120 bits (132), Expect = 4e-22 Identities = 331/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||| ||||| ||||| ||||| || | || | ||| ||||| Sbjct 1107 GTACTCGCCGACGCGCTTTTCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCAT 1048 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCA-ATCTGTTTGAGGAGA 125875 | ||||| ||||||| | | || | | ||| || | | | |||| ||| Sbjct 1047 CCAGTCAAAGGGGTTCTGCACGCCGTAGATGGCCTTGCAGCCGAGAGCC--TTGACGAGG 990 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || |||| |||| ||| ||||||| ||| |||||||| || ||||| | Sbjct 989 CGGTCCGCGACGAACTTGATGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCG 930 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 |||||||||||| ||||||| | ||| || || ||||| | | ||| || Sbjct 929 ACGGGGAGCGCGTCCGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATCTCG 870 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACG---GCAAAC 126052 || | | | || | | || ||| | | |||||| || | ||||| Sbjct 869 TGCACGCGGGCCTCGCTGGGCGGGTTGATGAGCTTGCGGAAGAG---CAGGCAAGCAAAG 813 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| | |||||||| ||| ||| | ||||| |||||| || || |||||| Sbjct 812 TCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATG 753 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||| | |||||| || || ||||| || |||||||||||||| ||||| Sbjct 752 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCG 693 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAACCACTT 126231 || ||| || | | ||| ||||| ||||||| || || ||| ||| | | Sbjct 692 ACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGC-AGATGTTGCCGTCCATGTAGCG 634 Query 126232 CATCGCCCACTGCGCCTTTT 126251 ||| |||||||||||||||| Sbjct 633 CATGGCCCACTGCGCCTTTT 614 >seq6412 Length=4986 Score = 105 bits (116), Expect = 8e-18 Identities = 253/379 (67%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 172573 CAACTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTG 172632 || |||||| || || |||||||||| |||||| | |||| || || ||||||||||| Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984 Query 172633 TGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG---CTCGGA 172689 || ||||||| ||| ||| ||||| ||||| || | || ||||| || || || Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGG- 1925 Query 172690 AACATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTC 172749 || || ||| ||| | || || |||| ||||||| ||| || | || || Sbjct 1924 --TGTCGGCGTAAGTCTTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 1867 Query 172750 TTGGTTTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAG 172809 | ||| ||| || | || || |||||||| || ||| ||||| | Sbjct 1866 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 1807 Query 172810 AGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTT 172869 || || || ||||||| || || || || || || || | ||||| ||||| Sbjct 1806 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAGCCCGCTGATGGCGAGCGTCTT 1747 Query 172870 CGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCT 172928 ||||| |||||||| || | |||||| || || || | || | ||| | | || || | Sbjct 1746 TGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGT-TGCGGCCGCCGGCGT 1688 Query 172929 TGTTCGCATCGTCCAACTT 172947 |||| || ||||| | ||| Sbjct 1687 TGTTGGCGTCGTCGAGCTT 1669 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 171953 AGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCG 172012 || || ||||| ||||| || |||| || | |||| |||| ||||| || Sbjct 2675 AGCAGGTTGATGTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGAC 2616 Query 172013 AGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCC 172072 || ||||| |||||||| ||||| ||||| | |||| ||| || | | | ||| || Sbjct 2615 AGCGAGACCTCACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCG 2556 Query 172073 ACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAA 172132 ||||| || || |||||| || | |||||| ||| | | ||||| | ||| || Sbjct 2555 ACCTTGATGTCCGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAG 2496 Query 172133 GGCTTGAGGCCGTCGGCCATG 172153 ||||||||||||||| ||||| Sbjct 2495 GGCTTGAGGCCGTCGACCATG 2475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597273226073120