Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 226 3e-54
seq236 120 4e-22
seq6412 105 8e-18
>seq5216
Length=2424
Score = 226 bits (250), Expect = 3e-54
Identities = 1115/1747 (64%), Gaps = 57/1747 (3%)
Strand=Plus/Minus
Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656
|| || ||||||| || |||||||| || ||||||| | || | || |||||
Sbjct 2294 CGCAGATAGTACAATCCGGTCTTGAGACCGCGCTTCCACGAGTAAAAGTGGCACGAGGTG 2235
Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716
| |||| || || | ||||| ||| ||| | || || || |||||||||
Sbjct 2234 AGCTTGCTGACGGTGGCGTCGGCCATGTAGATGTTGAGCGACTGCGACTGGTCGATGAAG 2175
Query 113717 CGTCCACGATCCGCCGCCATATCAATCA--CATCCTTCATCTTGATTTCCCACACAGTTC 113774
|| ||||| || || | ||| || | || | | |||||| ||||| || ||
Sbjct 2174 GCGCCGCGATCGGCGGCGAGATCGATGAGGCAGCGCTG--CTTGATCTCCCAGACGGTCT 2117
Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834
||||||| ||| | || || ||||| | | | || || | ||||| | |
Sbjct 2116 TGTAGAGCGCCTTGAGGTCGTCGGGGATGGCGCCAACGTTCTGCACCGAGCCGCGGTC-- 2059
Query 113835 TGACCATGAGATCCTTC---ATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 113891
| |||||| | || || || | ||||||||| | |||| |||| |
Sbjct 2058 -GGCCATGATCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGCGAGATGAGGTCCTTGA 2000
Query 113892 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 113951
|| || | ||||| || ||||| || |||||| ||| | | || || |||
Sbjct 1999 GCAGGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCGCGAGTACATGTTGC 1940
Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCA 114011
| ||| | ||||||||| ||| ||| || | || || | ||| ||||| |||||||
Sbjct 1939 TGGTGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTCGAGGCCGTGGGCA 1880
Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGT 114071
|||| || | || || |||||| | ||| | | | | | ||| | || | |
Sbjct 1879 TGGGCGCGACCAGCAGCGAGTTACGCACACCGTGCTGCATGACGCGCTGACGCAGCGTCT 1820
Query 114072 CCCAGTCGTAGTTGAGCT------TTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 114125
||||||| || ||||| | | || | | | ||| | || ||||||| | |
Sbjct 1819 CCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGC 1760
Query 114126 CTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG 114185
| | | ||||| || ||| |||| ||| |||||||| ||| ||||| |||
Sbjct 1759 CCTCGCTCATGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCGC 1700
Query 114186 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG-CGAGCATTCA--TTGCCT 114242
| || | ||| | || || ||||| || ||| || | || | ||||
Sbjct 1699 ACGAGGCGGTGCAGGCGCCAAAGTAGATGGTCTCGAAGATGTCGCGG-TTGAGCTTGCG- 1642
Query 114243 TGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGA 114302
|||||| | ||||| | || || | || | ||| ||||| || || |
Sbjct 1641 -GGCCTCCGGGCTCTCAAAGGGGAAGCGCAGCTCCATGAGCGCATTGGCGAGGCCCTGAA 1583
Query 114303 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGAT 114359
| || | ||| || ||||| || | | | || | || ||| |||| ||||| |
Sbjct 1582 CGCCAATGCCGATGGGGCGGTGGCGCGTGTTGC---TGCGCTCGGCCTCCTCGACGGGGT 1526
Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419
| || || | ||||| || | || || || |||||||| ||||| |||| || | |
Sbjct 1525 AGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGTGACATCGTAGA 1466
Query 114420 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTG 114476
| | | | || | ||| ||| ||| ||||| |||| | ||| ||| |
Sbjct 1465 GGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCGCAGGTTGATGG 1409
Query 114477 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 114536
| || || || || || | | ||| || | | |||||| || || || || ||||
Sbjct 1408 AGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGTGCACA 1349
Query 114537 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596
|| || ||| ||| |||| | |||||| || || ||||| ||| || || ||||
Sbjct 1348 GGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCT 1289
Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 114656
|| | |||||| | ||| || ||||| | ||| | | || || | ||||| |
Sbjct 1288 TGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTGGTACCAGAGGT 1229
Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716
| ||| ||| || | | | || ||||||| |||||| |||||| | |
Sbjct 1228 CCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAGAGCTCCT 1169
Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAG-CCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775
||||| || || | | || ||||| |||| | |||| | ||||||||||| | |
Sbjct 1168 TGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTG-GCCTCGTTCGGGCAGAAGAGGGTC 1110
Query 114776 CATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAG 114835
|| | |||| ||||||| ||| || ||||| |||| |||||| || |||||
Sbjct 1109 CAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGGCGTAGAAG 1050
Query 114836 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895
|| || || ||| | || || | || || || || | ||| | |||||| |
Sbjct 1049 AGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAAGTCCTCG 990
Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCC 114952
| || |||||||| || || ||||||| |||| || ||||| || | || ||
Sbjct 989 ACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGCCC 930
Query 114953 TGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGAT 115012
|||| || || | || ||| | || || ||||||||||| || | || || | ||
Sbjct 929 TGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCGAC 870
Query 115013 TGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCATGGATGTGCATAC 115070
||||| || || || ||| || | | | ||| | || | ||||||| | |
Sbjct 869 TGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTGTGGATGTTGACGC 812
Query 115071 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC-TC-CGTGAGACTGCCGTAGATCCC 115128
| || || || || |||| ||||| ||||||| || || | | ||| | |||| ||
Sbjct 811 CGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTCTG--GAAGATGCC 754
Query 115129 GTCGATCGAGTCACCCTT-ATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 115187
||||||||||| |||| || ||| | |||||||||||||||||||| || | || |
Sbjct 753 CTCGATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGG 695
Query 115188 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCG 115246
| || |||||||||||||| || || ||||| |||| | || | || |||||| | |||
Sbjct 694 TGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCGACATCATGTCG 636
Query 115247 TAGGTCTCCAAGACGGCGGGA---ATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303
|||||||| || |||| || ||||| | | ||| || |||| ||||| |||||
Sbjct 635 TAGGTCTC---GATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATG 579
Query 115304 AACATGT 115310
| |||||
Sbjct 578 AGCATGT 572
>seq236
Length=1170
Score = 120 bits (132), Expect = 4e-22
Identities = 331/500 (66%), Gaps = 12/500 (2%)
Strand=Plus/Minus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| || || || ||||| ||||| ||||| ||||| || | || | ||| |||||
Sbjct 1107 GTACTCGCCGACGCGCTTTTCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCAT 1048
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCA-ATCTGTTTGAGGAGA 125875
| ||||| ||||||| | | || | | ||| || | | | |||| |||
Sbjct 1047 CCAGTCAAAGGGGTTCTGCACGCCGTAGATGGCCTTGCAGCCGAGAGCC--TTGACGAGG 990
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| |||| |||| ||| ||||||| ||| |||||||| || ||||| |
Sbjct 989 CGGTCCGCGACGAACTTGATGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCG 930
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
|||||||||||| ||||||| | ||| || || ||||| | | ||| ||
Sbjct 929 ACGGGGAGCGCGTCCGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATCTCG 870
Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACG---GCAAAC 126052
|| | | | || | | || ||| | | |||||| || | |||||
Sbjct 869 TGCACGCGGGCCTCGCTGGGCGGGTTGATGAGCTTGCGGAAGAG---CAGGCAAGCAAAG 813
Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112
|| ||| | |||||||| ||| ||| | ||||| |||||| || || ||||||
Sbjct 812 TCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATG 753
Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172
|| || |||||||| | |||||| || || ||||| || |||||||||||||| |||||
Sbjct 752 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCG 693
Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAACCACTT 126231
|| ||| || | | ||| ||||| ||||||| || || ||| ||| | |
Sbjct 692 ACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGC-AGATGTTGCCGTCCATGTAGCG 634
Query 126232 CATCGCCCACTGCGCCTTTT 126251
||| ||||||||||||||||
Sbjct 633 CATGGCCCACTGCGCCTTTT 614
>seq6412
Length=4986
Score = 105 bits (116), Expect = 8e-18
Identities = 253/379 (67%), Gaps = 8/379 (2%)
Strand=Plus/Minus
Query 172573 CAACTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTG 172632
|| |||||| || || |||||||||| |||||| | |||| || || |||||||||||
Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984
Query 172633 TGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG---CTCGGA 172689
|| ||||||| ||| ||| ||||| ||||| || | || ||||| || || ||
Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGG- 1925
Query 172690 AACATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTC 172749
|| || ||| ||| | || || |||| ||||||| ||| || | || ||
Sbjct 1924 --TGTCGGCGTAAGTCTTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 1867
Query 172750 TTGGTTTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAG 172809
| ||| ||| || | || || |||||||| || ||| ||||| |
Sbjct 1866 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 1807
Query 172810 AGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTT 172869
|| || || ||||||| || || || || || || || | ||||| |||||
Sbjct 1806 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAGCCCGCTGATGGCGAGCGTCTT 1747
Query 172870 CGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCT 172928
||||| |||||||| || | |||||| || || || | || | ||| | | || || |
Sbjct 1746 TGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGT-TGCGGCCGCCGGCGT 1688
Query 172929 TGTTCGCATCGTCCAACTT 172947
|||| || ||||| | |||
Sbjct 1687 TGTTGGCGTCGTCGAGCTT 1669
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 171953 AGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCG 172012
|| || ||||| ||||| || |||| || | |||| |||| ||||| ||
Sbjct 2675 AGCAGGTTGATGTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGAC 2616
Query 172013 AGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCC 172072
|| ||||| |||||||| ||||| ||||| | |||| ||| || | | | ||| ||
Sbjct 2615 AGCGAGACCTCACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCG 2556
Query 172073 ACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAA 172132
||||| || || |||||| || | |||||| ||| | | ||||| | ||| ||
Sbjct 2555 ACCTTGATGTCCGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAG 2496
Query 172133 GGCTTGAGGCCGTCGGCCATG 172153
||||||||||||||| |||||
Sbjct 2495 GGCTTGAGGCCGTCGACCATG 2475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597273226073120
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