Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7528 116 4e-21 seq5348 82.4 8e-11 >seq7528 Length=2088 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | || || || || || |||||||| || | Sbjct 683 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 624 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| |||||||||||||| |||| || |||||||| || || ||| Sbjct 623 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGA 564 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||||| || ||| | || || | || || || Sbjct 563 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACG 504 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||||||||| | || || || || || ||||| Sbjct 503 TCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 457 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | || || || || || |||||||| || | Sbjct 227 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| |||||||||||||| |||| || ||||| || || || || Sbjct 167 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGG 108 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||||| ||| ||| | || || || || || Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACA 48 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | || || || || || ||||| Sbjct 47 TCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | || || || || || |||||||| || | Sbjct 911 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 852 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| ||||||||||| || | ||||| ||||| || || || || Sbjct 851 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGG 792 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||||| || ||| | || || || || || Sbjct 791 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 732 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||| | || || ||||| || ||||| Sbjct 731 TCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | |||||| || || | || || || || || |||||||| || | Sbjct 1139 CCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 1080 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || ||||||||||| || | ||||| ||||| || || || || Sbjct 1079 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGG 1020 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||||| || ||| | || || || || || Sbjct 1019 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 960 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||| | || || ||||| || ||||| Sbjct 959 TCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| || || | || || || || || |||||||| || Sbjct 456 ACCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 397 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| || ||||||||||| || | || || ||||| || || || || Sbjct 396 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGG 337 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||||| || ||| | || || || || || Sbjct 336 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 277 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | || || || || || ||||| Sbjct 276 ATCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 229 >seq5348 Length=435 Score = 82.4 bits (90), Expect = 8e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| || || | || || || || || ||||||||||| Sbjct 276 ACCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCT 217 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| || |||||||||||||| | ||||| ||||| || || || || Sbjct 216 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGG 157 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 || || || || || || || || ||||| || Sbjct 156 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCAC 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499577572792160