Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 471 4e-128
>seq5216
Length=2424
Score = 471 bits (522), Expect = 4e-128
Identities = 1163/1736 (67%), Gaps = 76/1736 (4%)
Strand=Plus/Plus
Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777
||||| | ||| | |||||| || || ||| |||||||| |||||| | || |||| |
Sbjct 493 TACGACTTCTTCGGCTTCAAGACGCTCGAGCGCTCGTACCTGCTCAAGGTTGACGGCAAG 552
Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837
| ||||||| ||||| || |||| ||||||||| || |||| || ||| ||||||
Sbjct 553 ATCGCCGAGCGCCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCACGAC 612
Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGA-----GACATGCGGGACAAGAGGTATACCATG- 93891
|| ||| | ||| | | ||| |||||| | ||| || || |
Sbjct 613 AT--CGA-----TCGCGC-CATCGAGACCTACGACATGATGTCGCAGAAGTTCTTCACGC 664
Query 93892 --GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949
||||| |||||||| |||||||| || ||||| || || ||||| || ||||
Sbjct 665 ACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGCTGCTTCC 724
Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009
| || | |||| |||||| ||| || || ||| | | ||| || ||| |||
Sbjct 725 TCGTGCACATGAAGGACGACTCGATCGAGGGCATCTTCCAGACGCTCGAGACCTGCGCGC 784
Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069
|||||| || ||||| || || ||||| ||| ||||| || | || ||| |||
Sbjct 785 GCATCTCCAAGTACGCCGGCGGCATCGGCGTCAACATCCACAACATCCGCGCCTCGGGCA 844
Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129
|||| || ||| ||||| ||| || |||||| | || |||||||| || |||||||
Sbjct 845 GCTACGTCGCCGGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCA 904
Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189
|| || | || ||||||||||||||||| || || | | | ||||| || ||||| | |
Sbjct 905 ACGACACCGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGT 964
Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249
| |||||||| |||||||| ||||| ||| ||||| || || || |||||||||||||
Sbjct 965 ACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCA 1024
Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309
| || || | ||| | |||||||||||||| |||||||| || ||||||||||||
Sbjct 1025 AGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGC 1084
Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCC--CGGACT 94367
| || |||||| ||| | |||||| || || || || || || | || || ||
Sbjct 1085 AGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAACGA--GGCCAAGGGCCT 1142
Query 94368 GTCCGACGTTTGTGGATCG-CGTTTTGAA-GACTTGTATGCTCGTTACGAATCGCAGGGC 94425
|| || || | || || || || || || | || | || ||||| | |||||
Sbjct 1143 CTCGGATGTCTACGG--CGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGC 1200
Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485
| | | ||| ||| || | | || ||| | |||||| || | ||| |
Sbjct 1201 CGCGGCCGCAAGACCATGCGCGCCCAGGACCTCTGGTACCAGATCCTGAGCTGCCAGATC 1260
Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545
||||| || ||| | ||| | ||||||||| | |||| |||||| |||||| ||
Sbjct 1261 GAGACCGGCGTGCCGTTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACCAGAAG 1320
Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605
||||||| | |||||| |||||| |||||||||||||| ||||||| | | ||
Sbjct 1321 AACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGGCCCCT 1380
Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA----GA 94661
|||||| | || || || ||||| | ||||||||||||| || ||||| | | ||
Sbjct 1381 GACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCTGCGCAAGTTCGT-CAACATTGA 1439
Query 94662 TGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGAT 94721
| ||| |||| |||| | || | || ||| | | |||| |
Sbjct 1440 GGAGGGCAC--CTACGACTTC-CAGGCCCTCTACGA---TGTCACC--------AAGG-T 1484
Query 94722 GGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGA 94778
|| | |||||| ||| | || |||||| ||||||||||||||| |||||| ||
Sbjct 1485 CGTCACCAAGAACCTCAACCGCGTCATCGACGGCAACTTCTACCCCGTCGAGGAGGCCGA 1544
Query 94779 GAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCT 94838
| | ||| | || || ||||||||||| ||||| ||||| |||| | |||||
Sbjct 1545 GCGCAGCAACACGCGCCACCGCCCCATCGGCATTGGCGTTCAGGGCCTCGCCAATGCGCT 1604
Query 94839 GGTGATGATGCGTCTGCCCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATAT 94897
|| | |||| | |||| || || | | || | | || |||| |
Sbjct 1605 CATGGAGCTGCGCTTCCCCTTTGAGAGCCCGGAGGCCCGCAAG-CTCAACCGCGACATCT 1663
Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGT-CCACTTGGC-CAGATCGGACGG 94955
|||| | ||| || | || ||| || | | ||| | | |||| || ||| |
Sbjct 1664 TCGAGACCATCTACTTTGGCGCC-TGCACCGCCTCGTGCGAGCTGGCGCA----GGAGGA 1718
Query 94956 CGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCT 95015
|| || || | | || ||| |||||| || |||||| || |||||||||||
Sbjct 1719 GGGCCCGTACCAGACCTTTTCCGGGTCGCCCATGAGCGAGGGCAAGTTCCAGTTCGACCT 1778
Query 95016 CTGGGGTGTGAAGCC---CTCGGGTCT---GTACGACTGGGAAGCTCTAC----GCGCTG 95065
|||| | |||||| | ||| || | |||||||| | || | ||||
Sbjct 1779 CTGGAACGAGAAGCCCAACCCGGAGCTCGGCTGGGACTGGGAGACGCTGCGTCAGCGC-- 1836
Query 95066 ATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCA 95125
|| || | ||||||||| ||| ||||||| || || ||||||||||||||||| |
Sbjct 1837 --GTCATGCAGCACGGTGTGCGTAACTCGCTGCTGGTCGCGCCCATGCCCACGGCCTCGA 1894
Query 95126 CGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACA 95185
| ||||||| || |||||| |||| | || || ||||||||| |||| |||||
Sbjct 1895 CCTCGCAGATTCTCGGCAACTGCGAGGCCTTTGAGCCCTTCACCAGCAACATGTACTCGC 1954
Query 95186 GGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGT 95245
| || || ||||| || || ||| | ||| |||||| ||||| || |||||| | |
Sbjct 1955 GCCGCGTCCTCGCTGGCGAGTTCACGGTCGTCAACACACACCTGCTCAAGGACCTCATCT 2014
Query 95246 CTCTGGGTGTGTGG--GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGT 95303
| | ||| | ||| | | | || ||||| | | || | |||||| ||
Sbjct 2015 CGCGCGGTCTCTGGACCCCGGCCA--TCCGCAACCAGATCATGGCCGACCGCGGCTCGGT 2072
Query 95304 CCAGAAC-ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGA 95362
|||||| | ||| || || || ||| |||||||||||||||||||||| |||||||
Sbjct 2073 GCAGAACGTTGGCGC-CATCCCCGACGACCTCAAGGCGCTCTACAAGACCGTCTGGGAGA 2131
Query 95363 TCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418
|| ||||||| | |||| | ||| |||| ||||| |||||||| ||||
Sbjct 2132 TCAAGCAGCGCTGCCTCATCGATCTCGCCGCCGATCGCGGCGCCTTCATCGACCAG 2187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494656634993440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |