Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5216 471 4e-128 >seq5216 Length=2424 Score = 471 bits (522), Expect = 4e-128 Identities = 1163/1736 (67%), Gaps = 76/1736 (4%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| | ||| | |||||| || || ||| |||||||| |||||| | || |||| | Sbjct 493 TACGACTTCTTCGGCTTCAAGACGCTCGAGCGCTCGTACCTGCTCAAGGTTGACGGCAAG 552 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 | ||||||| ||||| || |||| ||||||||| || |||| || ||| |||||| Sbjct 553 ATCGCCGAGCGCCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCACGAC 612 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGA-----GACATGCGGGACAAGAGGTATACCATG- 93891 || ||| | ||| | | ||| |||||| | ||| || || | Sbjct 613 AT--CGA-----TCGCGC-CATCGAGACCTACGACATGATGTCGCAGAAGTTCTTCACGC 664 Query 93892 --GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 ||||| |||||||| |||||||| || ||||| || || ||||| || |||| Sbjct 665 ACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGCTGCTTCC 724 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 | || | |||| |||||| ||| || || ||| | | ||| || ||| ||| Sbjct 725 TCGTGCACATGAAGGACGACTCGATCGAGGGCATCTTCCAGACGCTCGAGACCTGCGCGC 784 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||| || ||||| || || ||||| ||| ||||| || | || ||| ||| Sbjct 785 GCATCTCCAAGTACGCCGGCGGCATCGGCGTCAACATCCACAACATCCGCGCCTCGGGCA 844 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 |||| || ||| ||||| ||| || |||||| | || |||||||| || ||||||| Sbjct 845 GCTACGTCGCCGGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCA 904 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 || || | || ||||||||||||||||| || || | | | ||||| || ||||| | | Sbjct 905 ACGACACCGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGT 964 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | |||||||| |||||||| ||||| ||| ||||| || || || ||||||||||||| Sbjct 965 ACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCA 1024 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | ||| | |||||||||||||| |||||||| || |||||||||||| Sbjct 1025 AGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGC 1084 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCC--CGGACT 94367 | || |||||| ||| | |||||| || || || || || || | || || || Sbjct 1085 AGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAACGA--GGCCAAGGGCCT 1142 Query 94368 GTCCGACGTTTGTGGATCG-CGTTTTGAA-GACTTGTATGCTCGTTACGAATCGCAGGGC 94425 || || || | || || || || || || | || | || ||||| | ||||| Sbjct 1143 CTCGGATGTCTACGG--CGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGC 1200 Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 | | | ||| ||| || | | || ||| | |||||| || | ||| | Sbjct 1201 CGCGGCCGCAAGACCATGCGCGCCCAGGACCTCTGGTACCAGATCCTGAGCTGCCAGATC 1260 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 ||||| || ||| | ||| | ||||||||| | |||| |||||| |||||| || Sbjct 1261 GAGACCGGCGTGCCGTTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACCAGAAG 1320 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 ||||||| | |||||| |||||| |||||||||||||| ||||||| | | || Sbjct 1321 AACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGGCCCCT 1380 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA----GA 94661 |||||| | || || || ||||| | ||||||||||||| || ||||| | | || Sbjct 1381 GACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCTGCGCAAGTTCGT-CAACATTGA 1439 Query 94662 TGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGAT 94721 | ||| |||| |||| | || | || ||| | | |||| | Sbjct 1440 GGAGGGCAC--CTACGACTTC-CAGGCCCTCTACGA---TGTCACC--------AAGG-T 1484 Query 94722 GGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGA 94778 || | |||||| ||| | || |||||| ||||||||||||||| |||||| || Sbjct 1485 CGTCACCAAGAACCTCAACCGCGTCATCGACGGCAACTTCTACCCCGTCGAGGAGGCCGA 1544 Query 94779 GAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCT 94838 | | ||| | || || ||||||||||| ||||| ||||| |||| | ||||| Sbjct 1545 GCGCAGCAACACGCGCCACCGCCCCATCGGCATTGGCGTTCAGGGCCTCGCCAATGCGCT 1604 Query 94839 GGTGATGATGCGTCTGCCCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATAT 94897 || | |||| | |||| || || | | || | | || |||| | Sbjct 1605 CATGGAGCTGCGCTTCCCCTTTGAGAGCCCGGAGGCCCGCAAG-CTCAACCGCGACATCT 1663 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGT-CCACTTGGC-CAGATCGGACGG 94955 |||| | ||| || | || ||| || | | ||| | | |||| || ||| | Sbjct 1664 TCGAGACCATCTACTTTGGCGCC-TGCACCGCCTCGTGCGAGCTGGCGCA----GGAGGA 1718 Query 94956 CGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCT 95015 || || || | | || ||| |||||| || |||||| || ||||||||||| Sbjct 1719 GGGCCCGTACCAGACCTTTTCCGGGTCGCCCATGAGCGAGGGCAAGTTCCAGTTCGACCT 1778 Query 95016 CTGGGGTGTGAAGCC---CTCGGGTCT---GTACGACTGGGAAGCTCTAC----GCGCTG 95065 |||| | |||||| | ||| || | |||||||| | || | |||| Sbjct 1779 CTGGAACGAGAAGCCCAACCCGGAGCTCGGCTGGGACTGGGAGACGCTGCGTCAGCGC-- 1836 Query 95066 ATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCA 95125 || || | ||||||||| ||| ||||||| || || ||||||||||||||||| | Sbjct 1837 --GTCATGCAGCACGGTGTGCGTAACTCGCTGCTGGTCGCGCCCATGCCCACGGCCTCGA 1894 Query 95126 CGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACA 95185 | ||||||| || |||||| |||| | || || ||||||||| |||| ||||| Sbjct 1895 CCTCGCAGATTCTCGGCAACTGCGAGGCCTTTGAGCCCTTCACCAGCAACATGTACTCGC 1954 Query 95186 GGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGT 95245 | || || ||||| || || ||| | ||| |||||| ||||| || |||||| | | Sbjct 1955 GCCGCGTCCTCGCTGGCGAGTTCACGGTCGTCAACACACACCTGCTCAAGGACCTCATCT 2014 Query 95246 CTCTGGGTGTGTGG--GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGT 95303 | | ||| | ||| | | | || ||||| | | || | |||||| || Sbjct 2015 CGCGCGGTCTCTGGACCCCGGCCA--TCCGCAACCAGATCATGGCCGACCGCGGCTCGGT 2072 Query 95304 CCAGAAC-ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGA 95362 |||||| | ||| || || || ||| |||||||||||||||||||||| ||||||| Sbjct 2073 GCAGAACGTTGGCGC-CATCCCCGACGACCTCAAGGCGCTCTACAAGACCGTCTGGGAGA 2131 Query 95363 TCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || ||||||| | |||| | ||| |||| ||||| |||||||| |||| Sbjct 2132 TCAAGCAGCGCTGCCTCATCGATCTCGCCGCCGATCGCGGCGCCTTCATCGACCAG 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494656634993440