Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5216 280 1e-70 seq7528 98.7 1e-15 seq9789 84.2 2e-11 seq8082 84.2 2e-11 >seq5216 Length=2424 Score = 280 bits (310), Expect = 1e-70 Identities = 959/1475 (65%), Gaps = 41/1475 (3%) Strand=Plus/Minus Query 153006 ATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTC 153065 |||||||| | || || || |||||| || |||||||| || | || || | | Sbjct 2012 ATGAGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCGC 1953 Query 153066 AAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTG 153125 | || | ||||| ||||| || ||||||| ||| ||||| || || || | || Sbjct 1952 GAGTACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTC 1893 Query 153126 GTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCG 153185 | || || |||||| ||| |||| || || || |||| |||||| | ||| || Sbjct 1892 GAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACACCGTGCT---GCATGACG 1836 Query 153186 TCCTT---CAACGCCTGCCAATCCCAC---AGCGCCGAC---GGTGTCGCGTTCCACATG 153236 || || || || ||| ||||| ||| ||| || || ||||||| | | Sbjct 1835 CGCTGACGCAGCGTCTCCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGG 1776 Query 153237 TCGTACTGTAACACTCC-TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTC 153295 ||| |||| ||| || ||| || ||| |||| ||| || ||| ||| || Sbjct 1775 TCGAACTGGAACTTGCCCTCG-CTCATGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTC 1717 Query 153296 GCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC--GCGCCATAGTATATGGTTTCGGCGATT 153353 || ||||| ||||| | || | | || |||||| |||| ||||| ||| ||| Sbjct 1716 CTCCTGCGCCAGCTCGCA-CGAGGCG-GTGCAGGCGCCAAAGTAGATGGTCTCGAAGATG 1659 Query 153354 TGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCG 153413 | ||||| | || || |||||| | || | ||||||| || | || Sbjct 1658 TCGCGGTTGAGCTTGCGGGCCTCCGGGCTCTCAAAGGGGAAGCGCAGCTCCATGAGCGCA 1599 Query 153414 TCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCG 153473 | ||| || ||||| | || | ||||||||| || || | |||||||||| ||| Sbjct 1598 TTGGCGAGGCCCTGAACGCCAATGCCGATGGGGCGGTGGCGCGTGTTGCTGCGC-TCGGC 1540 Query 153474 CTCG-CTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTT 153532 ||| | | ||| ||| |||| ||||| | ||||||||| || || || Sbjct 1539 CTCCTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTT 1480 Query 153533 AGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATT 153592 || | | | || || ||| || ||||| || || | | ||| | Sbjct 1479 GGTGACATCGTAGAGGGCCTGGAAGTCGTAGGTGCCCTCCTCAATGTTGACGAACTTGCG 1420 Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 153652 || | || || || || || |||||||| ||| || | | | ||||| | ||| Sbjct 1419 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 1360 Query 153653 CTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATT 153712 ||||| ||| ||||| | | || |||| ||| | || | ||| || ||||| || Sbjct 1359 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 1300 Query 153713 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA-CTTGCGTTTCGACGATAA 153771 ||| ||||| |||||||||||| |||| |||||||||||| || || || | ||| Sbjct 1299 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTC-AGGATCT 1241 Query 153772 ---ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATC 153828 ||| |||||||| || |||| || || ||||||||| ||||||| | Sbjct 1240 GGTACCAG---AGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGC 1184 Query 153829 GCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCG 153888 ||||||| || || ||||||||||||||| || | |||||| || | || Sbjct 1183 GCTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCG 1124 Query 153889 GACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCC 153948 | || | || | ||| | || ||| | ||| || |||| || || || || |||| Sbjct 1123 GGCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCC 1064 Query 153949 AGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGA- 154007 |||| ||||| | ||||||||| || | |||||| ||| ||| || | || Sbjct 1063 AGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC--TTGCGGAG 1006 Query 154008 -TTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTT 154066 | | | | | || |||||||||||| || || | ||| | ||| | || || || Sbjct 1005 CTCAATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTT 946 Query 154067 ACGCTTTCCGCC---CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 ||||| ||||| ||| || |||| ||| | | | |||||||||||| | ||| || Sbjct 945 GCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGG 886 Query 154124 TTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTG 154183 | | |||| | | ||||||||| || | |||||| |||||| | | Sbjct 885 CACAATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTT 826 Query 154184 ATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGT 154243 || | ||| ||||| ||||||||| ||||||| || ||| |||||| | ||||| Sbjct 825 GTGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGT 766 Query 154244 CCTGTAGATGCCGTCGATGCTATCGTCGCGGACGC---CGAGCAAGAAACACGAACACAT 154300 | | ||||||| ||||| ||||| | | |||| ||| | | ||| ||| Sbjct 765 CTGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGA---CAT 709 Query 154301 TTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTG 154360 |||||| | | || || || |||||||| || | |||||||| || | || || Sbjct 708 TTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTG 649 Query 154361 GCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGC 154420 ||||||| ||| || ||||||||| ||||| || | ||| ||||||| | Sbjct 648 CGACATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGA 589 Query 154421 GACGCGCATGAGCATGTGCTGCGGACGTTCGGCGA 154455 |||||||||||||||||||||||| || ||||||| Sbjct 588 GACGCGCATGAGCATGTGCTGCGGGCGCTCGGCGA 554 >seq7528 Length=2088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||| ||||| || || |||| Sbjct 194 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCG 135 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || ||||||||||| || || || || || || ||||| ||| || || || | Sbjct 134 AAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 75 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || |||| ||| | || || || || || || || Sbjct 74 TTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTG 15 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 14 ACAAAGATCTGCAT 1 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || || || | Sbjct 422 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 363 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || |||||||| || || || || || || ||||| ||| || || || | Sbjct 362 AAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 303 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || |||| || | || || || || || || || Sbjct 302 TTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTG 243 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 242 ACAAAGATCTGCATG 228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || || || | Sbjct 1106 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 1047 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||||||||| || || || || || || ||||| ||| || || || | Sbjct 1046 AAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 987 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || || | || | || || || || || || || Sbjct 986 TTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTG 927 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 926 ACGAAGATCTGCATG 912 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || | || || ||| ||||| || || |||| Sbjct 650 GACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCG 591 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| || || || || || || || ||||| ||| || || || | Sbjct 590 AAAATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 531 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| || |||| || | || || || || || || || Sbjct 530 TTCTCGATGGTGTCGCTGGGCTCAACGTCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTG 471 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 470 ACAAAGATCTGCAT 457 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || | || || ||| ||||| || || || | Sbjct 878 GACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCG 819 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||||||||| || || || || || || ||||| ||| || || || | Sbjct 818 AAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 759 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || || | || | || || || || || || || Sbjct 758 TTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTG 699 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 698 ACGAAGATCTGCATG 684 >seq9789 Length=465 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 57300 GGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTC 57359 ||||||||||||||||||| |||||| || ||| || | |||| ||| | ||||| | Sbjct 270 GGCCTCGACGTTGCCCAAGCTGCCGACATGGCGCTCGTCGGCGTCGGGGCCTCCGTGGTT 211 Query 57360 GCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAA 57419 ||||| ||||| |||||||||||| ||| || |||||||| ||||||| | Sbjct 210 CTTGCCGTGCGGGTTGAAGTGCTCGCCCAGCGAGGTCGGTGCGTTGCTGAGGTCGCCGGA 151 Query 57420 C 57420 | Sbjct 150 C 150 >seq8082 Length=462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || || |||| Sbjct 194 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 135 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || |||||||| || || || || || || ||||| ||| | || | || | Sbjct 134 AAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTCAC 76 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | | ||| || |||| || | || ||||| || || || || Sbjct 75 GTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTT 16 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 15 GACGAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496195627894080