Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 150 2e-31
seq7528 145 7e-30
seq5348 125 7e-24
seq3754 125 7e-24
seq8082 95.1 1e-14
seq236 93.3 4e-14
>seq5216
Length=2424
Score = 150 bits (166), Expect = 2e-31
Identities = 340/500 (68%), Gaps = 22/500 (4%)
Strand=Plus/Minus
Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCC---GGTTTTGTGCGCAGATAGTACATGCC 145775
|||||||||||| || | || | ||||| || |||||||||||||||| ||
Sbjct 2334 GTCGACGGTGAATTGGATAGCAT---CGGCCTTGGGGCGCGTGCGCAGATAGTACAATCC 2278
Query 145776 GGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGT--ACG-T 145832
||||||||| || ||||| ||||||||| || ||| ||| | | ||| |
Sbjct 2277 GGTCTTGAGACCGCGCTTCCACGAGTAAAAGTG---GCACGAGGTGAGCTTGCTGACGGT 2221
Query 145833 GGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGG 145891
|| ||||| | | | || || || || ||| || ||||| || ||| || ||||
Sbjct 2220 GGCGTCGGCCATGTAGATGTTGAGCGACTGCGACTGGTCGATGAA-GGCGCCGCGATCGG 2162
Query 145892 CGGCCATGTCTATCATGCA-CTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTG 145950
|||| | || || | ||| | || || | | ||||| |||| || |||| |||||
Sbjct 2161 CGGCGAGATCGATGAGGCAGCGCTGCTTGA-TCTCCCAGACGGTCTTGTAGAGCGCCTTG 2103
Query 145951 ACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTG 146010
| || | ||| || || ||| ||||||||| || || ||||||| || | ||||
Sbjct 2102 AGGTCGTCGGGGATGGCGCCAACGTTCTGCACCGAGCCGCGGTCGGCCATGATCTGGTTG 2043
Query 146011 CGCAATTCTGGAGTGTAAAT---GTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTG 146067
|| | | || || | | | | || | |||| |||||| || | ||||
Sbjct 2042 CGGATGGCCGGGGTCCAGAGACCGCGCGAG---ATGAGGTCCTTGAGCAGGTGTGTGTTG 1986
Query 146068 ACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCG 146127
|| ||| |||||||| ||||| ||||| | | |||| |||||||||||| |||||
Sbjct 1985 ACGACCGTGAACTCGCCAGCGAGGACGCGGCGCGAGTACATGTTGCTGGTGAAGGGCTCA 1926
Query 146128 AACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGC 146187
|| | |||| ||| ||||| ||||||| |||| || || |||||| ||| ||||||
Sbjct 1925 AAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCGACCAGC 1866
Query 146188 AAAGAGTTTCTCACGCCGTG 146207
| ||||| | ||| |||||
Sbjct 1865 AGCGAGTTACGCACACCGTG 1846
Score = 86.0 bits (94), Expect = 6e-12
Identities = 129/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 146613 AACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTT 146672
|| ||||||| ||||| | | ||| ||||| | ||| || ||||| ||||||
Sbjct 1437 AATGTTGACGAACTTGCGCAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGG 1378
Query 146673 GTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAttttt 146732
| | | |||| | ||||||| ||| ||||| | ||||||||||||| | || ||
Sbjct 1377 GGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTT 1318
Query 146733 ttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789
|||| | |||| |||||||| ||||||| |||||||| |||| | ||||| ||
Sbjct 1317 CTGGT---TCGACTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTC 1261
Query 146790 GA 146791
||
Sbjct 1260 GA 1259
>seq7528
Length=2088
Score = 145 bits (160), Expect = 7e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | || ||||| || || || ||||| ||||
Sbjct 455 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 396
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || |||||| |||| | ||||| ||||| || ||
Sbjct 395 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGG 336
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| |||||||| | | |||| |||||||| ||||||
Sbjct 335 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 276
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||| ||| | || |||||||| || || || ||||| |||||||||
Sbjct 275 TCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 228
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | || ||||| || || || ||||| ||||
Sbjct 227 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| | || | ||||| ||||| || ||
Sbjct 167 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGG 108
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| |||||||| | | |||| |||||||| ||||||
Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACA 48
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | || |||||||| || || || ||||| ||||||||
Sbjct 47 TCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
Score = 129 bits (142), Expect = 6e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||||||||| | || | ||| | || | || ||||| || || || ||||| ||||
Sbjct 1140 TCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 1081
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| |||||| || || ||||| || |||||| |||| | ||||| ||||| || ||
Sbjct 1080 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGG 1021
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| |||||||| | | |||| |||||||| ||||||
Sbjct 1020 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 961
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || || ||||| || || || || || |||||||||
Sbjct 960 ATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCATG 912
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||| | || | || ||||| || || || ||||| || |
Sbjct 911 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 852
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || |||||| |||| | ||||| ||||| || ||
Sbjct 851 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGG 792
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| |||||||| | | |||| |||||||| ||||||
Sbjct 791 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 732
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || || ||||| || || || || || |||||||||
Sbjct 731 TCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCATG 684
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||| | || | || ||||| || || || ||||| || |
Sbjct 683 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 624
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| | || | ||||||||||| || ||
Sbjct 623 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGA 564
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| |||||||| | | |||| |||||| | ||| ||
Sbjct 563 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACG 504
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | || |||||||| || || || ||||| ||||||||
Sbjct 503 TCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 457
>seq5348
Length=435
Score = 125 bits (138), Expect = 7e-24
Identities = 162/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||| | || | || ||||| || || || ||||||||||
Sbjct 275 CCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTG 216
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| |||| | ||||| ||||| || ||
Sbjct 215 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGG 156
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || |||||||| | | |||| |||||||| ||||||
Sbjct 155 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 96
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 127110
|||| ||| | || || || || || || |||||||| |||||
Sbjct 95 TCGAGGGTGATAGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 52
>seq3754
Length=471
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || || || |||| |
Sbjct 227 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTC 168
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| |||| | ||||| ||||| || ||
Sbjct 167 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 108
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| |||||||| | | |||| |||||||| ||||||
Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACA 48
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || ||||| || || || || || || ||||||||
Sbjct 47 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1
>seq8082
Length=462
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| |||| | |||||| || || ||||| || ||
Sbjct 197 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 138
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||| ||||| || || ||||||||||||||| || || |||
Sbjct 137 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 78
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||||| |||||| |||| ||| | || || || || || ||
Sbjct 77 ACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 18
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 17 TTGACGAAGATCTGCAT 1
>seq236
Length=1170
Score = 93.3 bits (102), Expect = 4e-14
Identities = 156/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 47068 TGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCA 47127
|||||||||||||| |||||| ||||||||||| ||||| || | | | | ||
Sbjct 599 TGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCA 658
Query 47128 CTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187
| | ||||| || | ||| ||| || |||||||||| |||||||||||||| ||
Sbjct 659 CCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 718
Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247
|| || || || | | || | || | ||||| || ||||| || ||| |
Sbjct 719 TTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 778
Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT 47293
|| | ||| | ||||| ||| |||||||| ||||||| || ||
Sbjct 779 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCT 824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475436821367360
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