Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5216 84.2 2e-11 >seq5216 Length=2424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||| ||||||| || || || ||||||||||||||| | | ||| | ||| | | Sbjct 550 AAGATCGCCGAGCGCCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCAC 609 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| ||| | ||| || ||||| ||||||| || || || ||||||||||| Sbjct 610 GACATCGATCGCGCCATCGAGACCTACGACATGATGTCGCAGAAGTTCTTCACGCACGCC 669 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCAC 123043 | || || | ||| ||||||||| Sbjct 670 ACGCCGACCCTCTTCAACGCCGGCAC 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451942382969440