Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5216 210 3e-49 seq236 116 5e-21 seq6412 105 8e-18 >seq5216 Length=2424 Score = 210 bits (232), Expect = 3e-49 Identities = 643/975 (66%), Gaps = 23/975 (2%) Strand=Plus/Minus Query 116310 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 116369 ||| ||||| || || || | ||||| || | || || || |||||||| ||||| || Sbjct 1536 CTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGT 1477 Query 116370 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGG 116426 || || | || | | | || | ||| ||| ||| ||||| |||| | Sbjct 1476 GACATCGTAGAGGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCG 1420 Query 116427 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 116486 ||| ||| || || || || || || | | ||| || | | |||||| || || Sbjct 1419 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 1360 Query 116487 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 116546 || || |||| || || ||| ||| |||| | |||||| || || ||||| ||| Sbjct 1359 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 1300 Query 116547 ACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 || || |||||| ||||||| | ||| || ||||| | ||| | | || || Sbjct 1299 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTG 1240 Query 116607 CTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 116666 | ||| | || ||| ||| || | | | || ||||||| |||||| Sbjct 1239 GTACCAGAGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTC 1180 Query 116667 GTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAG-CCCTGGTGCCTTATCTGGAC 116725 |||||| ||| ||||| || || | || ||||| |||| | |||| | || | Sbjct 1179 GTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTG-GCCTCGTTCGGGC 1121 Query 116726 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 116785 ||||||| | ||| | |||| || |||| ||| || ||||| |||| ||||| Sbjct 1120 AGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGA 1061 Query 116786 GCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 116845 | || ||||||| || || ||| | || || | || || || || | ||| | Sbjct 1060 GGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAA 1001 Query 116846 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA- 116904 |||||| || || |||||||| || || ||||||| |||| || |||||||| Sbjct 1000 TGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCT 941 Query 116905 --CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 | || |||||| || || | || || |||| || ||||||||||| || | | Sbjct 940 TGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAA 881 Query 116963 TACCATCAGATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTGGCTCTGACATCGTGG 117021 | || | || ||||| || || || ||| | | | ||| | || | |||| Sbjct 880 TGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA-GGCGCGGATGTTGTGG 822 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC-TC-CGTGAGACTGC 117079 |||| | || || || || || |||| ||||| | ||||| || || | | ||| Sbjct 821 ATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTCTG- 763 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGACATTTGT 117138 | |||| || ||||||||||| |||| || ||| | ||||||||||||||||||||| Sbjct 762 -GAAGATGCCCTCGATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGACATTTGC 705 Query 117139 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 117197 || | || || || |||||||||||||| || || ||||| |||| | || | || || Sbjct 704 GGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCGA 646 Query 117198 CATCTTATCGTAGGTCTCCAAGAC-AGAGGGAATGTCTTCCCCGTGAATACCGATTGAGA 117256 |||| | ||||||||||| | | | || | ||||| | | ||| || |||| |||| Sbjct 645 CATCATGTCGTAGGTCTCGATGGCGCGATCG-ATGTCGTGCTTGTGGATGCCGACGGAGA 587 Query 117257 CCCGCATAAACATGT 117271 | ||||| | ||||| Sbjct 586 CGCGCATGAGCATGT 572 >seq236 Length=1170 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | |||||||| ||| ||| | ||||| |||||| ||||| Sbjct 819 AGCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACC 760 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || |||||||| | |||||| || || ||||| ||||| ||||||||||| Sbjct 759 CGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGAT 700 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGC 127682 ||||| || ||| || | | || ||||||||||||| || Sbjct 699 GCCCTCGACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGC 656 >seq6412 Length=4986 Score = 105 bits (116), Expect = 8e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 175973 AGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCG 176032 || || ||||| ||||| ||||||| | || | ||||| |||| ||||| || Sbjct 2675 AGCAGGTTGATGTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGAC 2616 Query 176033 AGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCC 176092 || ||||| |||||||| ||||| ||||| | |||| || || | | | |||||| Sbjct 2615 AGCGAGACCTCACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCG 2556 Query 176093 ACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAA 176152 ||||| || || |||||| || | |||||| ||| | | ||||| | ||| || Sbjct 2555 ACCTTGATGTCCGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAG 2496 Query 176153 GGCTTGAGGCCGTCGGCCATG 176173 ||||||||||||||| ||||| Sbjct 2495 GGCTTGAGGCCGTCGACCATG 2475 Score = 100 bits (110), Expect = 3e-16 Identities = 252/379 (66%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 176593 CAACTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTG 176652 || |||||| || || |||||||||| |||||| | || | || || ||||||||||| Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984 Query 176653 TGAACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAG---CTCGGA 176709 || ||||||| ||| ||| ||||| |||||||| | || ||||| || || || Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGG- 1925 Query 176710 AACATCTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTC 176769 || ||| ||| || | || || |||| |||||| ||| || | || || Sbjct 1924 --TGTCGGCGTAAGTCTTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 1867 Query 176770 TTGGTTTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAG 176829 | ||| ||| || | || || |||||||| || ||| || || | Sbjct 1866 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 1807 Query 176830 AGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTT 176889 || || || ||||||| || || || || || ||| || | ||||| ||||| Sbjct 1806 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAGCCCGCTGATGGCGAGCGTCTT 1747 Query 176890 CGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCT 176948 ||||| |||||||| || | |||||| || || || | || | ||| | | || || | Sbjct 1746 TGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGT-TGCGGCCGCCGGCGT 1688 Query 176949 TGTTCGCATCGTCCAACTT 176967 |||| || ||||| | ||| Sbjct 1687 TGTTGGCGTCGTCGAGCTT 1669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613424652606240