Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5216 163 5e-35 seq236 131 3e-25 >seq5216 Length=2424 Score = 163 bits (180), Expect = 5e-35 Identities = 447/668 (67%), Gaps = 24/668 (4%) Strand=Plus/Minus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 ||||||||||| |||||||| || || || |||| ||| | ||| || | || Sbjct 2292 CAGATAGTACAATCCGGTCTTGAGACCGCGCTTCCACGAGTAAAAGTGGCACGAGGTGAG 2233 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 ||||| ||| ||| ||||||||||| ||||| || ||||| ||||||||||| || Sbjct 2232 CTTGCTGACGGTGGCGTCGGCCATGTAGATGTTGAGCGACTGCGACTGGTCGATGAA-GG 2174 Query 204004 CGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGA 204062 |||| ||||| ||||| | || ||| | | |||| |||||||| || |||||| Sbjct 2173 CGCCGCGATCGGCGGCGAGATCGATGAGGCAGCGCTGCTTGATCTCCCAGACGGTCTTGT 2114 Query 204063 ACA-CGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGC 204120 | | || || || || | || | | || |||| ||| | ||||||| |||||| Sbjct 2113 AGAGCGCCT-TGAGGTCGTCGGGGATGGCG-CCAACGTTCTGCACCGAGCCGCGGTCGGC 2056 Query 204121 CATCAGTCTCATCCTCG-TCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCA 204179 ||| | ||| | | | || ||| | || | ||| || ||| | || Sbjct 2055 CATGA-TCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGCGAGATGAGGTCCTTGAGCA 1997 Query 204180 GGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGG 204239 |||| | ||||| || | || || || | || || | || | | ||| |||| ||| Sbjct 1996 GGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCGCGAGTACATGTTGCTGG 1937 Query 204240 TGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGG 204299 |||| || || || |||||| |||||||| |||||| | ||| |||||||||||||| Sbjct 1936 TGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGG 1877 Query 204300 GAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCT---TCAGAG--- 204353 | || | ||||| ||||| |||||||||| | ||| ||||| ||| | Sbjct 1876 GCGCGACCAGCAGCGAGTTACGCACACCGTGCTGCATGAC---GCGCTGACGCAGCGTCT 1820 Query 204354 ---AGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGC 204410 || |||| || || || |||| ||| || ||| | ||||||||| || ||| Sbjct 1819 CCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGC 1760 Query 204411 CTTGACTGACTGGGCTGCCC-TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTG 204469 | | || | ||||| ||| | ||| | || || ||||| | ||||||| | Sbjct 1759 CCTCGCTCA-TGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCG 1701 Query 204470 CACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC- 204528 |||||||||| |||| | |||| |||||||| ||||| | || || | || || Sbjct 1700 CACGAGGCGGTGCAGGCGCCAAAGTAGATGGTCTCGAAGATGT-CGCGGTTGAGCTTGCG 1642 Query 204529 GGCCTCCG 204536 |||||||| Sbjct 1641 GGCCTCCG 1634 Score = 95.1 bits (104), Expect = 2e-14 Identities = 465/728 (64%), Gaps = 18/728 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | |||||||||||||| ||| | |||| | | || | | || |||||| || Sbjct 1368 CTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGA 1309 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||||||||| |||| ||||||| | | ||||||||||| ||| |||| ||||| | | Sbjct 1308 CTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCT 1249 Query 205003 CAGAATGTGGGTCCACAATTC----GCGAGCCTCCACTTGC-TTCACGTACATCCCTTGA 205057 ||| || ||| ||| | || ||| || | ||||| | || | ||| | Sbjct 1248 CAGGATCTGGTACCAGAGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTT--- 1192 Query 205058 GACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCC-ATCAGCCCTGG 205116 |||||| ||| ||| || || || ||||| || ||| | ||||| | Sbjct 1191 --CTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTG 1134 Query 205117 ACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACA 205175 | | || ||| || | || | ||| | ||| | | | | || | || |||||| | Sbjct 1133 GCCTCGTTCGGG-CAGAAGAGGGTCCAGGTGCTG-TTGGCCTCGACACGCTGCATAAAAA 1076 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 ||||| || ||| ||| |||| || || || ||||| | | | || | || ||| Sbjct 1075 GGTCGGGGACCCAGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGT 1016 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 |||| | || | | || | | |||||||||||| ||||| | ||| ||| | Sbjct 1015 TCTTGCGGAGCTCAATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGA 956 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 | ||| | |||| || ||||||||||| ||| | | ||||||| || | Sbjct 955 AGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGC 896 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415 | ||||| ||||| | ||||| | ||||| |||| | || | ||| | Sbjct 895 GAAGCATAGGCACAATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGG 836 Query 205416 CCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-C 205474 | | | |||| |||| |||| || ||||| | |||||| ||| | ||||| Sbjct 835 CGCGGATGTTGTGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGG 776 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCA-GTGTCACCAGATAGCA 205533 ||| | || || | ||||||| |||| || |||||| || ||| ||| || |||| Sbjct 775 TCTCG-AGCGTCTGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTG-CACGAGGAAGCA 718 Query 205534 CGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAA 205593 | || | | | |||||| |||| |||||| || || ||||||| |||| Sbjct 717 GCTCGACATTTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAA 658 Query 205594 GCGCTTCT 205601 | ||||| Sbjct 657 GAACTTCT 650 >seq236 Length=1170 Score = 131 bits (144), Expect = 3e-25 Identities = 414/623 (66%), Gaps = 19/623 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||| |||||||||||||||||||||| |||||| || ||||| | | || ||||| Sbjct 1092 CTTTTCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCATCCAGTCAAAGGGGTT 1033 Query 159709 CTTCACGTGATAGC--GCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 || |||| ||| || | | | ||||||||| | | | ||| || || || Sbjct 1032 CTGCACGCCGTAGATGGCCTTGCAG--CCGAGAGCCTTGACGAGGCGGTCCGCGACGAAC 975 Query 159767 TCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTC 159825 | |||||| || | ||| | |||| || || | ||| ||||||||||| || Sbjct 974 TTGATGTA-CTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCGACGGGGAGCGCGTC 916 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| | || || ||| |||||||| || | | |||| || | |||| || Sbjct 915 CGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATCT-CGTG-CACG--CGGG 860 Query 159886 CCCCGGCTTGCCCAAA--ATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 || || || | | ||| | | || || ||||| ||||||||| ||||| Sbjct 859 CCTCG-CTGGGCGGGTTGATGAGCTTGCGGAAGAGCAGGCAAGCAAAGTCGGTGTGCATG 801 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| || ||| | ||| ||||| | | |||| |||||||||| || ||| Sbjct 800 CCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCCGCGCTTC 741 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAA 160062 |||||||| || ||||| ||||||| | | | | || ||||| ||||| ||||||||||| Sbjct 740 TTGAGCCAGAAGATGGC-GCAAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGCCGCAAA 682 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 | ||||| | ||| |||| | | | || || | | | | | ||||||| | Sbjct 681 ACCGACGAGGCGCTCGGCAAAGGTGCAGATGTTGCCGTCCATGTAGCGCATGGCCCACTG 622 Query 160123 AGCCTTCTTTGCG-ATGCACGGCATGCG-CTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180 ||||| || ||| | ||| |||| ||| |||| |||||| || | | | ||| |||| Sbjct 621 CGCCTT-TTGGCGCACGCAGGGCA-GCGTGTCGAGGGCGTTGAAGAGGCCGGCCTTCTCC 564 Query 160181 TTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCG 160240 | || || || | || || |||||||| || | ||| | || ||| Sbjct 563 CTGCTGTCGCGAATGTAGGTGTCGATAAGGAGCGAGTACACCTCGGAGTGGATGTTCTCG 504 Query 160241 ATGGCCATCTGAAAGTTGTAGAA 160263 ||||||||||| ||| |||||| Sbjct 503 ATGGCCATCTGGAAGCCGTAGAA 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795048211867840