Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 163 5e-35
seq236 131 3e-25
>seq5216
Length=2424
Score = 163 bits (180), Expect = 5e-35
Identities = 447/668 (67%), Gaps = 24/668 (4%)
Strand=Plus/Minus
Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943
||||||||||| |||||||| || || || |||| ||| | ||| || | ||
Sbjct 2292 CAGATAGTACAATCCGGTCTTGAGACCGCGCTTCCACGAGTAAAAGTGGCACGAGGTGAG 2233
Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003
||||| ||| ||| ||||||||||| ||||| || ||||| ||||||||||| ||
Sbjct 2232 CTTGCTGACGGTGGCGTCGGCCATGTAGATGTTGAGCGACTGCGACTGGTCGATGAA-GG 2174
Query 204004 CGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGA 204062
|||| ||||| ||||| | || ||| | | |||| |||||||| || ||||||
Sbjct 2173 CGCCGCGATCGGCGGCGAGATCGATGAGGCAGCGCTGCTTGATCTCCCAGACGGTCTTGT 2114
Query 204063 ACA-CGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGC 204120
| | || || || || | || | | || |||| ||| | ||||||| ||||||
Sbjct 2113 AGAGCGCCT-TGAGGTCGTCGGGGATGGCG-CCAACGTTCTGCACCGAGCCGCGGTCGGC 2056
Query 204121 CATCAGTCTCATCCTCG-TCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCA 204179
||| | ||| | | | || ||| | || | ||| || ||| | ||
Sbjct 2055 CATGA-TCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGCGAGATGAGGTCCTTGAGCA 1997
Query 204180 GGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGG 204239
|||| | ||||| || | || || || | || || | || | | ||| |||| |||
Sbjct 1996 GGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCGCGAGTACATGTTGCTGG 1937
Query 204240 TGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGG 204299
|||| || || || |||||| |||||||| |||||| | ||| ||||||||||||||
Sbjct 1936 TGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGG 1877
Query 204300 GAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCT---TCAGAG--- 204353
| || | ||||| ||||| |||||||||| | ||| ||||| ||| |
Sbjct 1876 GCGCGACCAGCAGCGAGTTACGCACACCGTGCTGCATGAC---GCGCTGACGCAGCGTCT 1820
Query 204354 ---AGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGC 204410
|| |||| || || || |||| ||| || ||| | ||||||||| || |||
Sbjct 1819 CCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGC 1760
Query 204411 CTTGACTGACTGGGCTGCCC-TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTG 204469
| | || | ||||| ||| | ||| | || || ||||| | ||||||| |
Sbjct 1759 CCTCGCTCA-TGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCG 1701
Query 204470 CACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC- 204528
|||||||||| |||| | |||| |||||||| ||||| | || || | || ||
Sbjct 1700 CACGAGGCGGTGCAGGCGCCAAAGTAGATGGTCTCGAAGATGT-CGCGGTTGAGCTTGCG 1642
Query 204529 GGCCTCCG 204536
||||||||
Sbjct 1641 GGCCTCCG 1634
Score = 95.1 bits (104), Expect = 2e-14
Identities = 465/728 (64%), Gaps = 18/728 (2%)
Strand=Plus/Minus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942
||| | |||||||||||||| ||| | |||| | | || | | || |||||| ||
Sbjct 1368 CTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGA 1309
Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002
||||||||| |||| ||||||| | | ||||||||||| ||| |||| ||||| | |
Sbjct 1308 CTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCT 1249
Query 205003 CAGAATGTGGGTCCACAATTC----GCGAGCCTCCACTTGC-TTCACGTACATCCCTTGA 205057
||| || ||| ||| | || ||| || | ||||| | || | ||| |
Sbjct 1248 CAGGATCTGGTACCAGAGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTT--- 1192
Query 205058 GACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCC-ATCAGCCCTGG 205116
|||||| ||| ||| || || || ||||| || ||| | ||||| |
Sbjct 1191 --CTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTG 1134
Query 205117 ACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACA 205175
| | || ||| || | || | ||| | ||| | | | | || | || |||||| |
Sbjct 1133 GCCTCGTTCGGG-CAGAAGAGGGTCCAGGTGCTG-TTGGCCTCGACACGCTGCATAAAAA 1076
Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235
||||| || ||| ||| |||| || || || ||||| | | | || | || |||
Sbjct 1075 GGTCGGGGACCCAGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGT 1016
Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295
|||| | || | | || | | |||||||||||| ||||| | ||| ||| |
Sbjct 1015 TCTTGCGGAGCTCAATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGA 956
Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355
| ||| | |||| || ||||||||||| ||| | | ||||||| || |
Sbjct 955 AGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGC 896
Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415
| ||||| ||||| | ||||| | ||||| |||| | || | ||| |
Sbjct 895 GAAGCATAGGCACAATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGG 836
Query 205416 CCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-C 205474
| | | |||| |||| |||| || ||||| | |||||| ||| | |||||
Sbjct 835 CGCGGATGTTGTGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGG 776
Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCA-GTGTCACCAGATAGCA 205533
||| | || || | ||||||| |||| || |||||| || ||| ||| || ||||
Sbjct 775 TCTCG-AGCGTCTGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTG-CACGAGGAAGCA 718
Query 205534 CGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAA 205593
| || | | | |||||| |||| |||||| || || ||||||| ||||
Sbjct 717 GCTCGACATTTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAA 658
Query 205594 GCGCTTCT 205601
| |||||
Sbjct 657 GAACTTCT 650
>seq236
Length=1170
Score = 131 bits (144), Expect = 3e-25
Identities = 414/623 (66%), Gaps = 19/623 (3%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||| |||||||||||||||||||||| |||||| || ||||| | | || |||||
Sbjct 1092 CTTTTCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCATCCAGTCAAAGGGGTT 1033
Query 159709 CTTCACGTGATAGC--GCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766
|| |||| ||| || | | | ||||||||| | | | ||| || || ||
Sbjct 1032 CTGCACGCCGTAGATGGCCTTGCAG--CCGAGAGCCTTGACGAGGCGGTCCGCGACGAAC 975
Query 159767 TCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTC 159825
| |||||| || | ||| | |||| || || | ||| ||||||||||| ||
Sbjct 974 TTGATGTA-CTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCGACGGGGAGCGCGTC 916
Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885
||| | || || ||| |||||||| || | | |||| || | |||| ||
Sbjct 915 CGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATCT-CGTG-CACG--CGGG 860
Query 159886 CCCCGGCTTGCCCAAA--ATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943
|| || || | | ||| | | || || ||||| ||||||||| |||||
Sbjct 859 CCTCG-CTGGGCGGGTTGATGAGCTTGCGGAAGAGCAGGCAAGCAAAGTCGGTGTGCATG 801
Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003
|||||||| || ||| | ||| ||||| | | |||| |||||||||| || |||
Sbjct 800 CCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCCGCGCTTC 741
Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAA 160062
|||||||| || ||||| ||||||| | | | | || ||||| ||||| |||||||||||
Sbjct 740 TTGAGCCAGAAGATGGC-GCAAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGCCGCAAA 682
Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122
| ||||| | ||| |||| | | | || || | | | | | ||||||| |
Sbjct 681 ACCGACGAGGCGCTCGGCAAAGGTGCAGATGTTGCCGTCCATGTAGCGCATGGCCCACTG 622
Query 160123 AGCCTTCTTTGCG-ATGCACGGCATGCG-CTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180
||||| || ||| | ||| |||| ||| |||| |||||| || | | | ||| ||||
Sbjct 621 CGCCTT-TTGGCGCACGCAGGGCA-GCGTGTCGAGGGCGTTGAAGAGGCCGGCCTTCTCC 564
Query 160181 TTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCG 160240
| || || || | || || |||||||| || | ||| | || |||
Sbjct 563 CTGCTGTCGCGAATGTAGGTGTCGATAAGGAGCGAGTACACCTCGGAGTGGATGTTCTCG 504
Query 160241 ATGGCCATCTGAAAGTTGTAGAA 160263
||||||||||| ||| ||||||
Sbjct 503 ATGGCCATCTGGAAGCCGTAGAA 481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795048211867840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |