Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 134 3e-26
seq5348 129 1e-24
seq3754 125 2e-23
seq8082 116 9e-21
>seq7528
Length=2088
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || |||||||| || |||||||| |||| |||||||||| | || | || |||
Sbjct 668 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCT 609
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| |||||||| || ||||||||||| || || ||| || || |||
Sbjct 608 TCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 549
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||||||| |||| |||||| | | || || || | ||||| |||
Sbjct 548 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACGTCGAGAGTGATGGTC 489
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || ||||| || ||
Sbjct 488 TTGCCGGTGAGCGTCTTGACAAAGATCTG 460
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || |||||||| || |||||||| |||| |||||||||| | || | || |||
Sbjct 896 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCT 837
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||||||||||||||| || || || || || || |||
Sbjct 836 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 777
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||||||| |||| |||||| | | || ||||| | ||||| |||
Sbjct 776 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTC 717
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || || ||
Sbjct 716 TTCCCGGTGAGCGTCTTGACGAAGATCTG 688
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || |||||||| || |||||||| |||| ||||||||| | || | || ||
Sbjct 1124 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 1065
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||||||||||||||| || || || || || || |||
Sbjct 1064 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 1005
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||||||| |||| |||||| | | || ||||| | ||||| |||
Sbjct 1004 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTC 945
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || || ||
Sbjct 944 TTCCCGGTGAGCGTCTTGACGAAGATCTG 916
>seq5348
Length=435
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| || || |||||||| |||| |||||| || | || | || ||
Sbjct 260 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCC 201
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| |||||||||||||| ||||| || || || || || || |||
Sbjct 200 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 141
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||||| |||| |||||| | | || ||||| | ||||| |||
Sbjct 140 TGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTC 81
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || || ||||| || ||
Sbjct 80 TTACCCGTGAGGGTCTTTACAAAGATCTG 52
>seq3754
Length=471
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || |||||||| ||||||||||| |||| ||| ||||| || || | || ||
Sbjct 212 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCC 153
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||||||||| || ||||| || || || || || || |||
Sbjct 152 TCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 93
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||||| |||| |||||| | | || ||||| | ||||| |||
Sbjct 92 TGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTC 33
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || ||||| || || ||
Sbjct 32 TTGCCCGTGAGGGTCTTCACGAAGATCTG 4
>seq8082
Length=462
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || |||||||| || |||||||| |||| ||||||||| | || | || ||
Sbjct 212 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 153
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||||||||| || ||||| || || || || || || |||
Sbjct 152 TCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 93
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| |||| ||||| | | || ||||| | ||||| |||
Sbjct 92 TGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 33
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || || || || || ||
Sbjct 32 TTACCCGTGAGGGTCTTGACGAAGATCTG 4
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178759010501188
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |