Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 140 4e-28
seq3754 122 1e-22
seq8082 116 4e-21
seq5348 113 5e-20
>seq7528
Length=2088
Score = 140 bits (154), Expect = 4e-28
Identities = 146/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 648 CTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAA 589
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | || |||||||||| |||||||| ||| | |
Sbjct 588 AATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 529
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||||| | || || || | |||||||| ||||| || ||||| || ||
Sbjct 528 CTCGATGGTGTCGCTGGGCTCAACGTCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGAC 469
Query 46582 AAAGATTTGCAT 46593
|||||| |||||
Sbjct 468 AAAGATCTGCAT 457
Score = 136 bits (150), Expect = 4e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| || | || |||||| ||||| ||||||||| || ||||| |||| ||
Sbjct 210 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTC 151
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||||||||||||| || | ||||| || || | || | || ||||||||||
Sbjct 150 GAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 91
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||||| ||| | || | | ||||| | || ||||| | ||||||||| ||
Sbjct 90 GATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTGATGGTCTT 31
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || ||||| || |||||||| |||||
Sbjct 30 GCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
Score = 131 bits (144), Expect = 2e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| || | || |||||| ||||| ||||||||| || ||||| |||| ||
Sbjct 438 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 379
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||||||| ||||| || | |||||| || || | || | || ||||||||||
Sbjct 378 GAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 319
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||||| ||| | || | | ||||| | || ||||| | |||||||| ||
Sbjct 318 GATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTT 259
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || ||||| || |||||||| |||||
Sbjct 258 GCCGGTGAGCGTCTTGACAAAGATCTGCAT 229
Score = 116 bits (128), Expect = 4e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||| || ||||| |||| |||||||||||||| |||||
Sbjct 1104 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 1045
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||| || || | || | || |||||||||| |||||||| ||| | |
Sbjct 1044 GATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 985
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| | || ||||| | |||||||| || || || ||||| || ||
Sbjct 984 CTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGAC 925
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 924 GAAGATCTGCAT 913
Score = 113 bits (124), Expect = 5e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || ||||| |||| |||||||||||||| |||||
Sbjct 876 CTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAA 817
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||| || || | || | || |||||||||| |||||||| ||| | |
Sbjct 816 GATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 757
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| | || ||||| | |||||||| || || || ||||| || ||
Sbjct 756 CTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGAC 697
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 696 GAAGATCTGCAT 685
>seq3754
Length=471
Score = 122 bits (134), Expect = 1e-22
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| || | || |||||| ||||| || |||||| || ||||| |||| ||
Sbjct 210 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCCTC 151
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||||||||||||| || | |||||| || || | || | || ||||||||||
Sbjct 150 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 91
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||||| ||| | || | | ||||| | || ||||| | ||||| || ||
Sbjct 90 GATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTT 31
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || || || || ||||| |||||
Sbjct 30 GCCCGTGAGGGTCTTCACGAAGATCTGCAT 1
>seq8082
Length=462
Score = 116 bits (128), Expect = 4e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 192 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 133
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||| || || | || | || |||||||||| ||||| ||| | |
Sbjct 132 GATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTT 73
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| | || ||||| | |||||||| || ||||| || || || ||
Sbjct 72 CTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 13
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 12 GAAGATCTGCAT 1
>seq5348
Length=435
Score = 113 bits (124), Expect = 5e-20
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||| || |||| || |||||| ||||| ||||| ||| || ||||| |||| ||
Sbjct 258 CACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTC 199
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||||||||||||| || | |||||| || || | || | || ||||||||||
Sbjct 198 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 139
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||||| ||| | || | | ||||| | || ||||| | ||||| || ||
Sbjct 138 AATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTT 79
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTG 46590
||||| || || || |||||||| ||
Sbjct 78 ACCCGTGAGGGTCTTTACAAAGATCTG 52
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565162347173280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |