Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq236 260 1e-64
seq7528 149 6e-31
seq3754 140 3e-28
seq5348 134 1e-26
seq8082 132 5e-26
>seq236
Length=1170
Score = 260 bits (288), Expect = 1e-64
Identities = 559/823 (68%), Gaps = 22/823 (3%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
|| || ||||| || || || |||| || ||| || || ||| | || ||||||||
Sbjct 1091 TTTTCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCATCCAGTCAAAGGGGTT- 1033
Query 132685 GCTGT--GTTGTAG-TG--CTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGA 132739
||| | |||| || |||| ||||| | |||||| | ||| || ||||
Sbjct 1032 -CTGCACGCCGTAGATGGCCTTGCAGCCGAGAGCCTTGACGAGGCG---GTCCGCGACGA 977
Query 132740 ACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTT 132799
||| |||||| ||| |||| | | || | || | || || || ||||| |
Sbjct 976 ACTTGATGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCGACGGGGAGCGCGT 917
Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859
| | || ||| |||||| |||| ||| ||| ||| || ||||| |||
Sbjct 916 CCGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATCTCGTGCACGCGGGCCT 857
Query 132860 CGCTCGGCCGTTGCACCAAATGCTTG---AACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916
|||| ||| | | | | ||||| || | || ||||||||||||| |||| ||
Sbjct 856 CGCTGGGCGGGTTGATGA---GCTTGCGGAAGAGCAGGCAAGCAAAGTCGGTGTGCATGC 800
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
||||||| | | || | || ||| ||| || | || |||||||||||||| || |
Sbjct 799 CCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCCGCGCTTCT 740
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
||||||| || |||||| || |||||| ||||||| ||||||||||||||| |||
Sbjct 739 TGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGCCGCAAAAC 680
Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096
| || ||||||||| | || ||| |||| | | || |||||| ||||| | |
Sbjct 679 CGACGAGGCGCTCGGCAAAGGTGCAGATGTTGCCGTCCATGTAGCGCATGGCCCACTGCG 620
Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA-AACGGAGTT-TCTCTTC 133154
|||||| ||||| |||| ||| |||| |||||| || | ||| || || || |
Sbjct 619 CCTTTTGGCGCACGCAGGGCAGCGTGTCGAGGGCGTTGAAGAGGCCGGCCTTCTCCCTGC 560
Query 133155 CGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214
| | || | |||||||||||| ||| ||| |||| || ||||| | |||||| ||
Sbjct 559 TGTCG--CGAATGTAGGTGTCGATAAGGAGCGAGTACACCTCGGAGTGGATGTTCTCGAT 502
Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-C 133273
||| || || |||||||| ||||| || |||||| || ||| || || |||
Sbjct 501 GGCCATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGCAGGCTCACCTC-GCTGCAAAAGT 443
Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333
|||||| | || ||| ||||||||||| || ||||| |||||||| |||||||
Sbjct 442 TCTCGACGACGTTCTCGAGCACGATGCCGTCCGAGGACGCGAAGAAGGCCAGGACGTGCT 383
Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393
||| || || ||||| | | ||| || |||| | ||||| | |||||
Sbjct 382 TGACAAAGTGCTGCTCGCCCTTGGTCATTGAGTCAAAGTCCTTCTGGTCCTGGCCCAGGT 323
Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436
||| ||||||| | ||||| ||||| |||||||| || |||||
Sbjct 322 CCATCTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTA 280
>seq7528
Length=2088
Score = 149 bits (164), Expect = 6e-31
Identities = 164/216 (76%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || |||||||| ||||| ||||||||| |||| |||||| || |
Sbjct 229 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTCG 288
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| || ||| | || ||
Sbjct 289 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 347
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| || || | ||| ||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 348 ACAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 407
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || ||||||| ||
Sbjct 408 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCG 443
Score = 147 bits (162), Expect = 2e-30
Identities = 179/240 (75%), Gaps = 3/240 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || |||||||| || || ||||||||| | || |||||| || |
Sbjct 913 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 972
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| || ||| | || ||
Sbjct 973 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1031
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| ||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 1032 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 1091
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG-CCGCCGCACGC 38481
|||||| ||||| | || || || | ||||| || || | || || | ||||| |||
Sbjct 1092 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGGACTGCCGCGCGC 1151
Score = 145 bits (160), Expect = 8e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || |||||||| ||||| |||||||| |||| |||||| || |
Sbjct 1 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACGCTCGATGTCGAGCCCTCG 60
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | || |||
Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| ||||| ||||| || |||| ||||| |||| ||||||||||
Sbjct 121 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGCGACTACAAC 180
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| ||||| | || || || ||||||| || || | || |||
Sbjct 181 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGC 228
Score = 145 bits (160), Expect = 8e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || |||||||| ||||| |||||||| ||||||| ||| ||| |
Sbjct 457 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTCGACGTTGAGCCCAGC 516
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| |||||| | || ||
Sbjct 517 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 575
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| ||||| ||||| || |||| ||||| |||| ||||||||
Sbjct 576 GCAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 635
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || || || | ||||| || || | || |||
Sbjct 636 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 684
Score = 140 bits (154), Expect = 3e-28
Identities = 170/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || |||||||| || || ||||||||| | || |||||| || |
Sbjct 685 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 744
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| || ||| | || ||
Sbjct 745 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 803
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| ||||| ||||| || |||| ||||| |||| ||||||||
Sbjct 804 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 863
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || || || | ||||| || || | || |||
Sbjct 864 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 912
>seq3754
Length=471
Score = 140 bits (154), Expect = 3e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| || |||||| |||| |||||| || |
Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | || |||
Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||| |||
Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| |||| || || ||||||| ||
Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCG 215
>seq5348
Length=435
Score = 134 bits (148), Expect = 1e-26
Identities = 159/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
|| || || ||||| || |||||||| || || |||||| |||| |||||| || | |||
Sbjct 52 CAGATCTTTGTAAAGACCCTCACGGGTAAGACTATCACCCTCGATGTCGAGCCCTCGGAC 111
Query 38307 AGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365
| | | | |||| | || | || || | ||||| ||||| || ||| | || |||||
Sbjct 112 ACCATCGAGAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACA 170
Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425
||| ||||| | ||| ||||| ||||| || |||| ||||| |||| ||| ||||||||
Sbjct 171 GCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACAT 230
Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| ||||| | || ||||| | ||||| ||
Sbjct 231 CCAGAAGGAGTCCACCCTGCACCTCGTGCTCCG 263
>seq8082
Length=462
Score = 132 bits (146), Expect = 5e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || ||||||||| |||| |||||| || |
Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || || | ||||| ||||| || ||| | || ||
Sbjct 61 GACACGATCGAGAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCA 119
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| || || | ||| ||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 120 ACAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 179
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474
|||||| ||||| | || || || | ||||| || | | |||||| ||
Sbjct 180 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGGC 231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500105501749760
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