Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq236 260 1e-64 seq7528 149 6e-31 seq3754 140 3e-28 seq5348 134 1e-26 seq8082 132 5e-26 >seq236 Length=1170 Score = 260 bits (288), Expect = 1e-64 Identities = 559/823 (68%), Gaps = 22/823 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 || || ||||| || || || |||| || ||| || || ||| | || |||||||| Sbjct 1091 TTTTCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCATCCAGTCAAAGGGGTT- 1033 Query 132685 GCTGT--GTTGTAG-TG--CTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGA 132739 ||| | |||| || |||| ||||| | |||||| | ||| || |||| Sbjct 1032 -CTGCACGCCGTAGATGGCCTTGCAGCCGAGAGCCTTGACGAGGCG---GTCCGCGACGA 977 Query 132740 ACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTT 132799 ||| |||||| ||| |||| | | || | || | || || || ||||| | Sbjct 976 ACTTGATGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCGACGGGGAGCGCGT 917 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | | || ||| |||||| |||| ||| ||| ||| || ||||| ||| Sbjct 916 CCGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATCTCGTGCACGCGGGCCT 857 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTG---AACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916 |||| ||| | | | | ||||| || | || ||||||||||||| |||| || Sbjct 856 CGCTGGGCGGGTTGATGA---GCTTGCGGAAGAGCAGGCAAGCAAAGTCGGTGTGCATGC 800 Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | | || | || ||| ||| || | || |||||||||||||| || | Sbjct 799 CCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCCGCGCTTCT 740 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || |||||| || |||||| ||||||| ||||||||||||||| ||| Sbjct 739 TGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGCCGCAAAAC 680 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || ||||||||| | || ||| |||| | | || |||||| ||||| | | Sbjct 679 CGACGAGGCGCTCGGCAAAGGTGCAGATGTTGCCGTCCATGTAGCGCATGGCCCACTGCG 620 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA-AACGGAGTT-TCTCTTC 133154 |||||| ||||| |||| ||| |||| |||||| || | ||| || || || | Sbjct 619 CCTTTTGGCGCACGCAGGGCAGCGTGTCGAGGGCGTTGAAGAGGCCGGCCTTCTCCCTGC 560 Query 133155 CGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214 | | || | |||||||||||| ||| ||| |||| || ||||| | |||||| || Sbjct 559 TGTCG--CGAATGTAGGTGTCGATAAGGAGCGAGTACACCTCGGAGTGGATGTTCTCGAT 502 Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-C 133273 ||| || || |||||||| ||||| || |||||| || ||| || || ||| Sbjct 501 GGCCATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGCAGGCTCACCTC-GCTGCAAAAGT 443 Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||||| | || ||| ||||||||||| || ||||| |||||||| ||||||| Sbjct 442 TCTCGACGACGTTCTCGAGCACGATGCCGTCCGAGGACGCGAAGAAGGCCAGGACGTGCT 383 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 ||| || || ||||| | | ||| || |||| | ||||| | ||||| Sbjct 382 TGACAAAGTGCTGCTCGCCCTTGGTCATTGAGTCAAAGTCCTTCTGGTCCTGGCCCAGGT 323 Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 ||| ||||||| | ||||| ||||| |||||||| || ||||| Sbjct 322 CCATCTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTA 280 >seq7528 Length=2088 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| ||||||||| |||| |||||| || | Sbjct 229 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTCG 288 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | || || Sbjct 289 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 347 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 348 ACAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 407 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || ||||||| || Sbjct 408 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCG 443 Score = 147 bits (162), Expect = 2e-30 Identities = 179/240 (75%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| || || ||||||||| | || |||||| || | Sbjct 913 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 972 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | || || Sbjct 973 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1031 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 1032 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 1091 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG-CCGCCGCACGC 38481 |||||| ||||| | || || || | ||||| || || | || || | ||||| ||| Sbjct 1092 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGGACTGCCGCGCGC 1151 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| |||||||| |||| |||||| || | Sbjct 1 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACGCTCGATGTCGAGCCCTCG 60 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | || ||| Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || |||| ||||| |||| |||||||||| Sbjct 121 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGCGACTACAAC 180 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || || ||||||| || || | || ||| Sbjct 181 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGC 228 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| |||||||| ||||||| ||| ||| | Sbjct 457 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTCGACGTTGAGCCCAGC 516 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| |||||| | || || Sbjct 517 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 575 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| ||||| || |||| ||||| |||| |||||||| Sbjct 576 GCAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 635 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || | ||||| || || | || ||| Sbjct 636 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 684 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| || || ||||||||| | || |||||| || | Sbjct 685 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 744 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | || || Sbjct 745 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 803 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| ||||| ||||| || |||| ||||| |||| |||||||| Sbjct 804 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 863 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || | ||||| || || | || ||| Sbjct 864 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 912 >seq3754 Length=471 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| |||| |||||| || | Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | || ||| Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||| ||| Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| |||| || || ||||||| || Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCG 215 >seq5348 Length=435 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || || ||||| || |||||||| || || |||||| |||| |||||| || | ||| Sbjct 52 CAGATCTTTGTAAAGACCCTCACGGGTAAGACTATCACCCTCGATGTCGAGCCCTCGGAC 111 Query 38307 AGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | | |||| | || | || || | ||||| ||||| || ||| | || ||||| Sbjct 112 ACCATCGAGAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACA 170 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 ||| ||||| | ||| ||||| ||||| || |||| ||||| |||| ||| |||||||| Sbjct 171 GCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACAT 230 Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| ||||| | || ||||| | ||||| || Sbjct 231 CCAGAAGGAGTCCACCCTGCACCTCGTGCTCCG 263 >seq8082 Length=462 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || ||||||||| |||| |||||| || | Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | ||||| ||||| || ||| | || || Sbjct 61 GACACGATCGAGAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCA 119 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 120 ACAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 179 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||||| ||||| | || || || | ||||| || | | |||||| || Sbjct 180 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGGC 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500105501749760