Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5889 260 2e-64 >seq5889 Length=1950 Score = 260 bits (288), Expect = 2e-64 Identities = 740/1128 (66%), Gaps = 12/1128 (1%) Strand=Plus/Minus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 ||||||||| ||||| || || ||||| ||||| |||||||||||||| || | Sbjct 1140 GATGGCGGCCTGGACGGTGGCGCCGTAGGCGACAGCCTCATCGGGGTTGATGCTGCGGCA 1081 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 | | || || ||||| || | ||| | ||| || | || ||||| || || || Sbjct 1080 CGGCTCCTTGCCGTTGAAGAACTCCTTGAGCATGGCCTGGACCTTGGGGATACGGGTGGA 1021 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTT-CGATTTATCGATCTTTGAGTCTCGAAGTG 7199 || ||||| | ||||| || | || | || || ||||| | ||| || || Sbjct 1020 GCCGCCGACGAGCACGATCTCGTGGACGGAGCCCTTGCTC-ATCTTGGCGTCGCGGAGGA 962 Query 7200 TTTTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTCCTCAAAACGT 7258 || ||||| || ||||| | || ||| ||||||| || ||||| || || Sbjct 961 CCTTCTCGACGGGCTCCATGG-TGGACTTGAAGTAGTCCATGTTGAGGTCCTCGAAGCGG 903 Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 || || | ||||| | ||| || || || ||| | | || || || ||| Sbjct 902 GCGCGCGAGATGGACGAGGTGAAGTCGACACCCTCGAAGAGGCCGTCGATCTCGATGTGG 843 Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 | || || | | || | ||| ||||| |||||||| || || || || | || || Sbjct 842 GCCTGGGCAGAGGCCGAGAGCGTGCGCTTGGCGCGCTCGCAGGCGGTGCGGAGGCGGCGC 783 Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAG 7438 ||| ||| ||| | || || || ||||| || || || ||||| | |||| Sbjct 782 TTGGCGCGCTCGTTGCTCGACATGTCCTTCTTGAACTTGCGCTTGAACTCGGCCATGAAG 723 Query 7439 TG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 || |||| | || | ||||| || || ||||| | ||| || || || ||||| || Sbjct 722 TGCTCGACG-AGGCGGTTGTCGAAGTCCTCGCCACCGAGGTGGGTGTCACCAGCGGTGGC 664 Query 7498 TTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACC 7557 ||||| || ||||| || | || ||| | | | ||| ||||| || || || || || Sbjct 663 CTTGACCTCGAAGATGCCCTCCTCGATGGTGAGGAGCGAGACATCGAAGGTGCCGCCGCC 604 Query 7558 CAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGAT 7617 |||||| || ||||| ||||| ||| | || || ||| ||||| ||||| ||||| Sbjct 603 CAGGTCGAAGATGAGGACGTTGCGCTCGCCCTCCTT---CTTGTCGAGGCCGTAGGCGAT 547 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGC 7677 ||||| || || || || || || || || || ||| ||||| || || | || Sbjct 546 GGCCGCGGCGGTGGGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCGATCACGCCGGC 487 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 || || || || || || ||||| ||||| ||||||||||| || || | ||| |||| Sbjct 486 GTCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAGTAGGCCGGCACGGTGATGACGGCGTT 427 Query 7738 CGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 | |||| | || ||||| || || ||| | | ||||| ||||| || |||||||| Sbjct 426 CTTGACCTCCTCGCCGAGGTAGCTCTCGGCGGTCTGCTTCATCTTGGTGAGGACCATCGA 367 Query 7798 TGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGG 7857 || ||||| || | || || ||| || || | || ||||| | || | ||| Sbjct 366 GGAGATCTCCTCCGGGGCGAAGGTCTTCTCCTCGCCCTGGAACTCAACCTTGATGACGGG 307 Query 7858 TTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTG 7917 || || | ||||| ||||| | | | || | || | ||| Sbjct 306 CTTGTCGTTGGGGCCGGGCTCCACCTTGAAGGGGAAGAACTTGAGGTCCTGCTGGGTGGC 247 Query 7918 TTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTT 7977 | ||||| ||||| | ||||| || ||||| || || || || ||||| | |||||| Sbjct 246 CGGCTCCGAGAACTTGCGGCCGATGAGGCGCTTGGCGTCGAAGACGGTGTTGTAGGGGTT 187 Query 7978 CATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGC 8037 ||||| || ||| || || || ||||| || || || | | || || || Sbjct 186 CATGGACACCTGCGACTTGGCGGCATCGCCGATGAGGCGCTCGGTGCT---GGTGAAGGC 130 Query 8038 GACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097 |||||||| ||||| || || || || |||||||| || || || || ||| ||| || Sbjct 129 CACGTACGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCCACGGAGTCATT 70 Query 8098 TTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 |||||| ||| |||||||| || || || || | ||||| ||||| Sbjct 69 CTGCCAGCAGCCCACGCACGAGTAGGTCGTGCCCAGGTCAATGCCGAT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635047342881760