Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq5889 260 2e-64
>seq5889
Length=1950
Score = 260 bits (288), Expect = 2e-64
Identities = 740/1128 (66%), Gaps = 12/1128 (1%)
Strand=Plus/Minus
Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080
||||||||| ||||| || || ||||| ||||| |||||||||||||| || |
Sbjct 1140 GATGGCGGCCTGGACGGTGGCGCCGTAGGCGACAGCCTCATCGGGGTTGATGCTGCGGCA 1081
Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140
| | || || ||||| || | ||| | ||| || | || ||||| || || ||
Sbjct 1080 CGGCTCCTTGCCGTTGAAGAACTCCTTGAGCATGGCCTGGACCTTGGGGATACGGGTGGA 1021
Query 7141 TCCACCGACCAAAACGATTTCATTCACTTT-CGATTTATCGATCTTTGAGTCTCGAAGTG 7199
|| ||||| | ||||| || | || | || || ||||| | ||| || ||
Sbjct 1020 GCCGCCGACGAGCACGATCTCGTGGACGGAGCCCTTGCTC-ATCTTGGCGTCGCGGAGGA 962
Query 7200 TTTTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTCCTCAAAACGT 7258
|| ||||| || ||||| | || ||| ||||||| || ||||| || ||
Sbjct 961 CCTTCTCGACGGGCTCCATGG-TGGACTTGAAGTAGTCCATGTTGAGGTCCTCGAAGCGG 903
Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318
|| || | ||||| | ||| || || || ||| | | || || || |||
Sbjct 902 GCGCGCGAGATGGACGAGGTGAAGTCGACACCCTCGAAGAGGCCGTCGATCTCGATGTGG 843
Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378
| || || | | || | ||| ||||| |||||||| || || || || | || ||
Sbjct 842 GCCTGGGCAGAGGCCGAGAGCGTGCGCTTGGCGCGCTCGCAGGCGGTGCGGAGGCGGCGC 783
Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAG 7438
||| ||| ||| | || || || ||||| || || || ||||| | ||||
Sbjct 782 TTGGCGCGCTCGTTGCTCGACATGTCCTTCTTGAACTTGCGCTTGAACTCGGCCATGAAG 723
Query 7439 TG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497
|| |||| | || | ||||| || || ||||| | ||| || || || ||||| ||
Sbjct 722 TGCTCGACG-AGGCGGTTGTCGAAGTCCTCGCCACCGAGGTGGGTGTCACCAGCGGTGGC 664
Query 7498 TTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACC 7557
||||| || ||||| || | || ||| | | | ||| ||||| || || || || ||
Sbjct 663 CTTGACCTCGAAGATGCCCTCCTCGATGGTGAGGAGCGAGACATCGAAGGTGCCGCCGCC 604
Query 7558 CAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGAT 7617
|||||| || ||||| ||||| ||| | || || ||| ||||| ||||| |||||
Sbjct 603 CAGGTCGAAGATGAGGACGTTGCGCTCGCCCTCCTT---CTTGTCGAGGCCGTAGGCGAT 547
Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGC 7677
||||| || || || || || || || || || ||| ||||| || || | ||
Sbjct 546 GGCCGCGGCGGTGGGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCGATCACGCCGGC 487
Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737
|| || || || || || ||||| ||||| ||||||||||| || || | ||| ||||
Sbjct 486 GTCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAGTAGGCCGGCACGGTGATGACGGCGTT 427
Query 7738 CGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797
| |||| | || ||||| || || ||| | | ||||| ||||| || ||||||||
Sbjct 426 CTTGACCTCCTCGCCGAGGTAGCTCTCGGCGGTCTGCTTCATCTTGGTGAGGACCATCGA 367
Query 7798 TGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGG 7857
|| ||||| || | || || ||| || || | || ||||| | || | |||
Sbjct 366 GGAGATCTCCTCCGGGGCGAAGGTCTTCTCCTCGCCCTGGAACTCAACCTTGATGACGGG 307
Query 7858 TTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTG 7917
|| || | ||||| ||||| | | | || | || | |||
Sbjct 306 CTTGTCGTTGGGGCCGGGCTCCACCTTGAAGGGGAAGAACTTGAGGTCCTGCTGGGTGGC 247
Query 7918 TTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTT 7977
| ||||| ||||| | ||||| || ||||| || || || || ||||| | ||||||
Sbjct 246 CGGCTCCGAGAACTTGCGGCCGATGAGGCGCTTGGCGTCGAAGACGGTGTTGTAGGGGTT 187
Query 7978 CATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGC 8037
||||| || ||| || || || ||||| || || || | | || || ||
Sbjct 186 CATGGACACCTGCGACTTGGCGGCATCGCCGATGAGGCGCTCGGTGCT---GGTGAAGGC 130
Query 8038 GACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097
|||||||| ||||| || || || || |||||||| || || || || ||| ||| ||
Sbjct 129 CACGTACGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCCACGGAGTCATT 70
Query 8098 TTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145
|||||| ||| |||||||| || || || || | ||||| |||||
Sbjct 69 CTGCCAGCAGCCCACGCACGAGTAGGTCGTGCCCAGGTCAATGCCGAT 22
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635047342881760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |