Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 165 1e-35
seq236 127 3e-24
seq302 102 1e-16
seq6412 95.1 2e-14
>seq5216
Length=2424
Score = 165 bits (182), Expect = 1e-35
Identities = 414/619 (67%), Gaps = 9/619 (1%)
Strand=Plus/Plus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670
||| ||| ||||| ||||||| ||| | |||| ||||| | | || || ||| |
Sbjct 564 CCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCACGACATCGATCGCGC 623
Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729
| ||||| ||||||| |||||| | | || | |||| ||||| || || |||||||
Sbjct 624 CATCGAGACCTACGACATGATGTCGCAGAAGT-TCTTCACGCACGCCACGCCGACCCTCT 682
Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC-AAGGAG 111788
||||||| || || || | || |||||||| || || ||||| | ||| | |||||
Sbjct 683 TCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGCTGCTTCCTCGT-GCACATGAAGGAC 741
Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848
|| || ||| | ||||| | | || ||| || || | ||||| |||| ||
Sbjct 742 GACTCGATCGAGGGCATCTTCCAGACGCTCGAGACCTGCGCGCGCATCTCCAAGTACGCC 801
Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA-GGTAC 111907
|| || ||||| | ||||||| | || | ||| | | | | | || ||
Sbjct 802 GGCGGCATCGGCGTCAACATCCACAACATCCGCGCCT-CGGGCAGCTACGTCGCCGGCAC 860
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
|| || || || | || ||| | || ||||||||||| || |||| ||| || |||||
Sbjct 861 CAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCCCGCTA 920
Query 111968 TGTAAACCAAGCTG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024
|| |||| | | ||| |||||||| || |||| | || || ||||| |||||
Sbjct 921 CGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCTTGGCA 980
Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084
||| || || ||| ||| ||||| | || ||||| || | ||||||| ||
Sbjct 981 CGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 1040
Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144
|||||| ||||||| ||| |||||| | || || || || ||| || | || |||| |
Sbjct 1041 CCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAGGCCAA 1100
Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204
||| ||| | ||||| || || || |||| || ||||| |||| | || ||
Sbjct 1101 CAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAGGGCCTCTCGGATGTCTACGGCGA 1160
Query 112205 GGAGTTTGAAGCCCTCTAC 112223
||||| | | ||||||
Sbjct 1161 CGAGTTCAAGGAGCTCTAC 1179
>seq236
Length=1170
Score = 127 bits (140), Expect = 3e-24
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231
||||||| ||||| ||| ||| |||||| || ||||| ||||||||||| || ||||
Sbjct 659 CCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 718
Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291
| ||||| || | |||||||||||||| || |||||||| |||||| ||||||||| |
Sbjct 719 TTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 778
Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|| | ||| || |||||||| | ||| || |||||
Sbjct 779 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGC 818
>seq302
Length=2502
Score = 102 bits (112), Expect = 1e-16
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119
|||| || || ||||||||||||||||||||||| || || | ||| || |||
Sbjct 1348 CCACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGCCAA 1289
Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179
||||||| || || ||| || ||| || || || |||||||| | ||||| | |||
Sbjct 1288 AGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAGTCGCTGCCGG 1229
Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238
|| || | || |||||| || | | || ||||| | || ||| || || |||||
Sbjct 1228 AA-ATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTCTTG 1170
Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288
|| ||||| || || |||||||| || || || |||||||||||
Sbjct 1169 CCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 1120
>seq6412
Length=4986
Score = 95.1 bits (104), Expect = 2e-14
Identities = 302/456 (66%), Gaps = 17/456 (4%)
Strand=Plus/Minus
Query 176686 CAACTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTG 176745
|| |||||| || |||||||||| ||| || | || | | || ||||| |||||
Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984
Query 176746 GGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGA 176802
|| || |||| || ||| |||||||||||||| | || || || || || ||
Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGT 1924
Query 176803 AACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTC 176862
| | | ||| ||| ||| | || || |||| ||||||| ||| || | || ||
Sbjct 1923 GTCGGC--GTAAGT-CTTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 1867
Query 176863 TTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAG 176922
| ||| ||| ||| | ||||| || || || || ||| ||||| |
Sbjct 1866 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 1807
Query 176923 AGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGC-AACCGCGAGCGTTT 176981
|| ||||| ||||||| ||||| || || || ||| ||||| | |||||||| |
Sbjct 1806 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAG-CCCGCTGATGGCGAGCGTCT 1748
Query 176982 TCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGA-TTG-TGCCGTACCCGC 177039
| || || |||||||| || | |||||| || || ||| | || ||| |||| || ||
Sbjct 1747 TTGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGTTGCGGCCG--CCGGC 1690
Query 177040 CTTGTTCGCATCATCCA-ATTTGGGAATACCAGTAATTTTGGACTTTCGCGTACCGTCAG 177098
||||| || || || | ||| || || | || ||||||||| ||| ||| | |
Sbjct 1689 GTTGTTGGCGTCGTCGAGCTTTTCGACGTCC-TTGATCTTGGACTTTTTCGTGCCGCCGG 1631
Query 177099 ATTT---TGAGAGTTCCTTCATCTCCTTAAACTTTG 177131
|| ||||| || |||||||||| |||||
Sbjct 1630 CCTTGCGCGAGAGCTCGCGCATCTCCTTAGCCTTTG 1595
Score = 82.4 bits (90), Expect = 9e-11
Identities = 168/250 (67%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 176017 CGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 176076
||| ||||| || || | | |||| ||| ||||| || | || || || |||||
Sbjct 2724 CGCGTCCTTGCCGCCGAGAATGCGCGAACCGAACTGGCCGCTGGGGAAGAGCAGGTTGAT 2665
Query 176077 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 176136
||||| || |||| || | ||||| |||| ||||| || || ||||| ||
Sbjct 2664 GTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGACAGCGAGACCTC 2605
Query 176137 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 176196
||||||||||||||| | ||| | ||| | | | | |||||| || || || ||
Sbjct 2604 ACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCGACCTTGATGTC 2545
Query 176197 ATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 176256
|||||| || | ||| || || | | |||||||| ||||| |||||||| ||
Sbjct 2544 CGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAGGGCTTGAGGCC 2485
Query 176257 ATCCGCCATG 176266
|| |||||
Sbjct 2484 GTCGACCATG 2475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620658879110080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |