Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5216 165 1e-35 seq236 127 3e-24 seq302 102 1e-16 seq6412 95.1 2e-14 >seq5216 Length=2424 Score = 165 bits (182), Expect = 1e-35 Identities = 414/619 (67%), Gaps = 9/619 (1%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| ||| | |||| ||||| | | || || ||| | Sbjct 564 CCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCACGACATCGATCGCGC 623 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| ||||||| |||||| | | || | |||| ||||| || || ||||||| Sbjct 624 CATCGAGACCTACGACATGATGTCGCAGAAGT-TCTTCACGCACGCCACGCCGACCCTCT 682 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC-AAGGAG 111788 ||||||| || || || | || |||||||| || || ||||| | ||| | ||||| Sbjct 683 TCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGCTGCTTCCTCGT-GCACATGAAGGAC 741 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || || ||| | ||||| | | || ||| || || | ||||| |||| || Sbjct 742 GACTCGATCGAGGGCATCTTCCAGACGCTCGAGACCTGCGCGCGCATCTCCAAGTACGCC 801 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA-GGTAC 111907 || || ||||| | ||||||| | || | ||| | | | | | || || Sbjct 802 GGCGGCATCGGCGTCAACATCCACAACATCCGCGCCT-CGGGCAGCTACGTCGCCGGCAC 860 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || || || | || ||| | || ||||||||||| || |||| ||| || ||||| Sbjct 861 CAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCCCGCTA 920 Query 111968 TGTAAACCAAGCTG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || |||| | | ||| |||||||| || |||| | || || ||||| ||||| Sbjct 921 CGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCTTGGCA 980 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||| || || ||| ||| ||||| | || ||||| || | ||||||| || Sbjct 981 CGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 1040 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 |||||| ||||||| ||| |||||| | || || || || ||| || | || |||| | Sbjct 1041 CCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAGGCCAA 1100 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 ||| ||| | ||||| || || || |||| || ||||| |||| | || || Sbjct 1101 CAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAGGGCCTCTCGGATGTCTACGGCGA 1160 Query 112205 GGAGTTTGAAGCCCTCTAC 112223 ||||| | | |||||| Sbjct 1161 CGAGTTCAAGGAGCTCTAC 1179 >seq236 Length=1170 Score = 127 bits (140), Expect = 3e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| ||||| ||| ||| |||||| || ||||| ||||||||||| || |||| Sbjct 659 CCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 718 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 | ||||| || | |||||||||||||| || |||||||| |||||| ||||||||| | Sbjct 719 TTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 778 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || | ||| || |||||||| | ||| || ||||| Sbjct 779 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGC 818 >seq302 Length=2502 Score = 102 bits (112), Expect = 1e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 |||| || || ||||||||||||||||||||||| || || | ||| || ||| Sbjct 1348 CCACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGCCAA 1289 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 ||||||| || || ||| || ||| || || || |||||||| | ||||| | ||| Sbjct 1288 AGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAGTCGCTGCCGG 1229 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 || || | || |||||| || | | || ||||| | || ||| || || ||||| Sbjct 1228 AA-ATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTCTTG 1170 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || ||||| || || |||||||| || || || ||||||||||| Sbjct 1169 CCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 1120 >seq6412 Length=4986 Score = 95.1 bits (104), Expect = 2e-14 Identities = 302/456 (66%), Gaps = 17/456 (4%) Strand=Plus/Minus Query 176686 CAACTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTG 176745 || |||||| || |||||||||| ||| || | || | | || ||||| ||||| Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984 Query 176746 GGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGA 176802 || || |||| || ||| |||||||||||||| | || || || || || || Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGT 1924 Query 176803 AACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTC 176862 | | | ||| ||| ||| | || || |||| ||||||| ||| || | || || Sbjct 1923 GTCGGC--GTAAGT-CTTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 1867 Query 176863 TTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAG 176922 | ||| ||| ||| | ||||| || || || || ||| ||||| | Sbjct 1866 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 1807 Query 176923 AGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGC-AACCGCGAGCGTTT 176981 || ||||| ||||||| ||||| || || || ||| ||||| | |||||||| | Sbjct 1806 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAG-CCCGCTGATGGCGAGCGTCT 1748 Query 176982 TCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGA-TTG-TGCCGTACCCGC 177039 | || || |||||||| || | |||||| || || ||| | || ||| |||| || || Sbjct 1747 TTGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGTTGCGGCCG--CCGGC 1690 Query 177040 CTTGTTCGCATCATCCA-ATTTGGGAATACCAGTAATTTTGGACTTTCGCGTACCGTCAG 177098 ||||| || || || | ||| || || | || ||||||||| ||| ||| | | Sbjct 1689 GTTGTTGGCGTCGTCGAGCTTTTCGACGTCC-TTGATCTTGGACTTTTTCGTGCCGCCGG 1631 Query 177099 ATTT---TGAGAGTTCCTTCATCTCCTTAAACTTTG 177131 || ||||| || |||||||||| ||||| Sbjct 1630 CCTTGCGCGAGAGCTCGCGCATCTCCTTAGCCTTTG 1595 Score = 82.4 bits (90), Expect = 9e-11 Identities = 168/250 (67%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 176017 CGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 176076 ||| ||||| || || | | |||| ||| ||||| || | || || || ||||| Sbjct 2724 CGCGTCCTTGCCGCCGAGAATGCGCGAACCGAACTGGCCGCTGGGGAAGAGCAGGTTGAT 2665 Query 176077 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 176136 ||||| || |||| || | ||||| |||| ||||| || || ||||| || Sbjct 2664 GTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGACAGCGAGACCTC 2605 Query 176137 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 176196 ||||||||||||||| | ||| | ||| | | | | |||||| || || || || Sbjct 2604 ACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCGACCTTGATGTC 2545 Query 176197 ATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 176256 |||||| || | ||| || || | | |||||||| ||||| |||||||| || Sbjct 2544 CGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAGGGCTTGAGGCC 2485 Query 176257 ATCCGCCATG 176266 || ||||| Sbjct 2484 GTCGACCATG 2475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620658879110080