Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq302 109 6e-19
>seq302
Length=2502
Score = 109 bits (120), Expect = 6e-19
Identities = 278/413 (67%), Gaps = 15/413 (4%)
Strand=Plus/Minus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| || || || || ||||| || | || || ||||| ||||| ||||| || |
Sbjct 1526 CGGTCAAAGCGGCCGGGGCGCAGAATGGCGGGGTCGAGAATGTCGACGCGGTTGGTGCCA 1467
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619
|||| || || | ||| ||| ||| | || ||||||||||| ||| ||||||
Sbjct 1466 GCAAGAACCACGACGCC---CTCCTTGGAGGTGAAGCCGTCCATTTCAACGAGCAGCTGG 1410
Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATA--CCACC--TGCCGAACGCTTCT 11674
|| | || | || ||||| |||||| | || | || || | ||| ||| |
Sbjct 1409 TTCAGGGTGTTCTCGCGCTCGTCGTTGCCGCCGCTGAAGCCGCCCTTACCGCGCGCG-CG 1351
Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734
|| |||||||| |||||||| ||||| ||||| || || ||| || |||||
Sbjct 1350 CGCC-ACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGC 1292
Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794
| || || || || || ||| | ||||| || ||||||||||||| ||| | || |
Sbjct 1291 CAAAGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAG-TCGCTG 1233
Query 11795 CAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853
| | | | || | |||||| || | | ||| || ||| | || || || || |||
Sbjct 1232 CCGGAAATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTC 1173
Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
|| || |||||||| | || ||||| || ||||| |||||||||||| ||
Sbjct 1172 TTGCCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 1120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588896753279200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |