Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq302 109 6e-19 >seq302 Length=2502 Score = 109 bits (120), Expect = 6e-19 Identities = 278/413 (67%), Gaps = 15/413 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || || ||||| || | || || ||||| ||||| ||||| || | Sbjct 1526 CGGTCAAAGCGGCCGGGGCGCAGAATGGCGGGGTCGAGAATGTCGACGCGGTTGGTGCCA 1467 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619 |||| || || | ||| ||| ||| | || ||||||||||| ||| |||||| Sbjct 1466 GCAAGAACCACGACGCC---CTCCTTGGAGGTGAAGCCGTCCATTTCAACGAGCAGCTGG 1410 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATA--CCACC--TGCCGAACGCTTCT 11674 || | || | || ||||| |||||| | || | || || | ||| ||| | Sbjct 1409 TTCAGGGTGTTCTCGCGCTCGTCGTTGCCGCCGCTGAAGCCGCCCTTACCGCGCGCG-CG 1351 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 || |||||||| |||||||| ||||| ||||| || || ||| || ||||| Sbjct 1350 CGCC-ACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGC 1292 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 | || || || || || ||| | ||||| || ||||||||||||| ||| | || | Sbjct 1291 CAAAGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAG-TCGCTG 1233 Query 11795 CAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | | | || | |||||| || | | ||| || ||| | || || || || ||| Sbjct 1232 CCGGAAATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTC 1173 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || || |||||||| | || ||||| || ||||| |||||||||||| || Sbjct 1172 TTGCCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 1120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588896753279200