Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 152 6e-32
seq6412 114 2e-20
seq302 96.9 4e-15
seq236 91.5 2e-13
>seq5216
Length=2424
Score = 152 bits (168), Expect = 6e-32
Identities = 626/974 (64%), Gaps = 21/974 (2%)
Strand=Plus/Minus
Query 106342 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 106401
||| ||||| || || || | ||| ||||| ||||| || || ||||| || | ||| ||
Sbjct 1536 CTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGT 1477
Query 106402 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TTGACATACTTTGG 106458
|| || | || | | || | |||| ||| ||| ||||| |||| |
Sbjct 1476 GACATCGTAGAGGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCG 1420
Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518
||| ||| || || | ||||| || || ||| || | | |||||| | ||
Sbjct 1419 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 1360
Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578
|| || |||| ||| || ||| || | || | ||||| ||||| ||| |||
Sbjct 1359 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 1300
Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638
||| || |||||| |||||||| | ||| || ||||| |||| | | || ||
Sbjct 1299 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTG 1240
Query 106639 CTTCCACACATCGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTACTT 106695
| ||| | || ||| | | ||| ||| ||| || |||||| ||||||
Sbjct 1239 GTACCAGAGGTCCTGGGCGCGCA---TGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCG 1183
Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755
|||||| | | ||||| || || | || ||||| || |||| || ||
Sbjct 1182 CTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCGG 1123
Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815
||||| || | ||| | |||| || |||| ||| |||||||| || | |||
Sbjct 1122 GCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCA 1063
Query 106816 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 106875
|||| | ||||| || | || |||| || | || ||||| || | |||
Sbjct 1062 GAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTC 1003
Query 106876 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 106935
|| ||| ||| || || |||||||| ||||| || || | |||| || ||||| ||
Sbjct 1002 AATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCG 943
Query 106936 AC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992
||| | | || | || ||||| || ||| |||| || ||||||||||| || |
Sbjct 942 CTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCAC 883
Query 106993 AATACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCA 107050
||| || | || || || || || || ||| || | | ||| | | |
Sbjct 882 AATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTG 825
Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110
||||||| | || || || || || |||| ||||| |||| || | || ||
Sbjct 824 TGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTC 765
Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170
|||| || | ||| ||||| ||||| || | |||||||| || ||||| |||
Sbjct 764 TGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGC 705
Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGA 107229
|| | || || || || ||||||||||| || || ||||| |||| | || | || ||
Sbjct 704 GGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCGA 646
Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289
|||| ||||||| ||||| | | | ||| ||||| | | ||||||||||| || ||
Sbjct 645 CATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGAC 586
Query 107290 ACGCATAAACATGT 107303
||||| | |||||
Sbjct 585 GCGCATGAGCATGT 572
>seq6412
Length=4986
Score = 114 bits (126), Expect = 2e-20
Identities = 262/384 (68%), Gaps = 18/384 (5%)
Strand=Plus/Minus
Query 169136 CAACTTGAGAAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTG 169195
|| |||||| || ||||||||||| |||||| | || | || || ||||| |||||
Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984
Query 169196 AGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAAC 169255
|| ||||| | || ||| ||||| ||||| || | || ||||| || |
Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGT 1924
Query 169256 ATCTTGGTA-GTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTT 169314
|| ||| ||||| || | || || |||| ||||||| ||| || | || || |
Sbjct 1923 GTCGGCGTAAGTCTTGCCCG-GCTGGAGGCCCATGATCTTCATGATATTCTGGATTTCCT 1865
Query 169315 GGTT-----TGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACG 169369
||| |||| || || |||| || || |||||||| || ||| |||||
Sbjct 1864 CGTTCTTCATGATCTG-GCCGTGC----GAGGCCTCGCGGACGTTGAGCAGCTTGCCACG 1810
Query 169370 GAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGC-GACCGCAAGGG 169428
| ||||||||||| |||| || || || |||||| ||| ||||| || || || |
Sbjct 1809 CAAGGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAG-CCCGCTGATGGCGAGCG 1751
Query 169429 TTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGA-TTGC-GCCGTACC 169486
| || || || |||||||| |||| ||||| || || || | || |||| |||| ||
Sbjct 1750 TCTTTGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGTTGCGGCCG--CC 1693
Query 169487 CGCCTTGTTTGCGTCGTCCAACTT 169510
|| ||||| |||||||| | |||
Sbjct 1692 GGCGTTGTTGGCGTCGTCGAGCTT 1669
>seq302
Length=2502
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426
|||| || || ||||||||||||||||| || || || || | |||||| |||
Sbjct 1348 CCACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGCCAA 1289
Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486
|||||||||| || | || ||| || || || |||||||| | ||||| | |||
Sbjct 1288 AGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAGTCGCTGCCGG 1229
Query 9487 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545
|| || | || |||||| || | | || ||||| | || ||| || || |||||
Sbjct 1228 AA-ATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTCTTG 1170
Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
|| ||||| || || |||||||| || ||| || |||||||||||
Sbjct 1169 CCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 1120
>seq236
Length=1170
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| || ||| | ||||| || ||| || | ||||| |||||| || ||
Sbjct 818 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCC 759
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393
|||||||| || |||||||| | ||| | || ||||| || || || |||||||||||
Sbjct 758 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATG 699
Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436
||||| || |||||| | | ||||||||||| |||| ||
Sbjct 698 CCCTCGACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGC 656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589901418083360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |