Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5216 152 6e-32 seq6412 114 2e-20 seq302 96.9 4e-15 seq236 91.5 2e-13 >seq5216 Length=2424 Score = 152 bits (168), Expect = 6e-32 Identities = 626/974 (64%), Gaps = 21/974 (2%) Strand=Plus/Minus Query 106342 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 106401 ||| ||||| || || || | ||| ||||| ||||| || || ||||| || | ||| || Sbjct 1536 CTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGT 1477 Query 106402 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TTGACATACTTTGG 106458 || || | || | | || | |||| ||| ||| ||||| |||| | Sbjct 1476 GACATCGTAGAGGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCG 1420 Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 ||| ||| || || | ||||| || || ||| || | | |||||| | || Sbjct 1419 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 1360 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 || || |||| ||| || ||| || | || | ||||| ||||| ||| ||| Sbjct 1359 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 1300 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| || |||||| |||||||| | ||| || ||||| |||| | | || || Sbjct 1299 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTG 1240 Query 106639 CTTCCACACATCGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTACTT 106695 | ||| | || ||| | | ||| ||| ||| || |||||| |||||| Sbjct 1239 GTACCAGAGGTCCTGGGCGCGCA---TGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCG 1183 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 |||||| | | ||||| || || | || ||||| || |||| || || Sbjct 1182 CTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCGG 1123 Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815 ||||| || | ||| | |||| || |||| ||| |||||||| || | ||| Sbjct 1122 GCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCA 1063 Query 106816 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 106875 |||| | ||||| || | || |||| || | || ||||| || | ||| Sbjct 1062 GAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTC 1003 Query 106876 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 106935 || ||| ||| || || |||||||| ||||| || || | |||| || ||||| || Sbjct 1002 AATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCG 943 Query 106936 AC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 ||| | | || | || ||||| || ||| |||| || ||||||||||| || | Sbjct 942 CTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCAC 883 Query 106993 AATACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCA 107050 ||| || | || || || || || || ||| || | | ||| | | | Sbjct 882 AATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTG 825 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110 ||||||| | || || || || || |||| ||||| |||| || | || || Sbjct 824 TGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTC 765 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 |||| || | ||| ||||| ||||| || | |||||||| || ||||| ||| Sbjct 764 TGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGC 705 Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGA 107229 || | || || || || ||||||||||| || || ||||| |||| | || | || || Sbjct 704 GGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCGA 646 Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289 |||| ||||||| ||||| | | | ||| ||||| | | ||||||||||| || || Sbjct 645 CATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGAC 586 Query 107290 ACGCATAAACATGT 107303 ||||| | ||||| Sbjct 585 GCGCATGAGCATGT 572 >seq6412 Length=4986 Score = 114 bits (126), Expect = 2e-20 Identities = 262/384 (68%), Gaps = 18/384 (5%) Strand=Plus/Minus Query 169136 CAACTTGAGAAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTG 169195 || |||||| || ||||||||||| |||||| | || | || || ||||| ||||| Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984 Query 169196 AGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAAC 169255 || ||||| | || ||| ||||| ||||| || | || ||||| || | Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGT 1924 Query 169256 ATCTTGGTA-GTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTT 169314 || ||| ||||| || | || || |||| ||||||| ||| || | || || | Sbjct 1923 GTCGGCGTAAGTCTTGCCCG-GCTGGAGGCCCATGATCTTCATGATATTCTGGATTTCCT 1865 Query 169315 GGTT-----TGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACG 169369 ||| |||| || || |||| || || |||||||| || ||| ||||| Sbjct 1864 CGTTCTTCATGATCTG-GCCGTGC----GAGGCCTCGCGGACGTTGAGCAGCTTGCCACG 1810 Query 169370 GAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGC-GACCGCAAGGG 169428 | ||||||||||| |||| || || || |||||| ||| ||||| || || || | Sbjct 1809 CAAGGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAG-CCCGCTGATGGCGAGCG 1751 Query 169429 TTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGA-TTGC-GCCGTACC 169486 | || || || |||||||| |||| ||||| || || || | || |||| |||| || Sbjct 1750 TCTTTGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGTTGCGGCCG--CC 1693 Query 169487 CGCCTTGTTTGCGTCGTCCAACTT 169510 || ||||| |||||||| | ||| Sbjct 1692 GGCGTTGTTGGCGTCGTCGAGCTT 1669 >seq302 Length=2502 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 |||| || || ||||||||||||||||| || || || || | |||||| ||| Sbjct 1348 CCACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGCCAA 1289 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486 |||||||||| || | || ||| || || || |||||||| | ||||| | ||| Sbjct 1288 AGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAGTCGCTGCCGG 1229 Query 9487 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 || || | || |||||| || | | || ||||| | || ||| || || ||||| Sbjct 1228 AA-ATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTCTTG 1170 Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || ||||| || || |||||||| || ||| || ||||||||||| Sbjct 1169 CCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 1120 >seq236 Length=1170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||||| || ||| || | ||||| |||||| || || Sbjct 818 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCC 759 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || ||||| || || || ||||||||||| Sbjct 758 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATG 699 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 ||||| || |||||| | | ||||||||||| |||| || Sbjct 698 CCCTCGACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGC 656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589901418083360