Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 98.7 6e-16
seq3754 95.1 8e-15
seq8082 87.8 1e-12
seq5348 87.8 1e-12
>seq7528
Length=2088
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || | || | || || ||||| || ||||| ||
Sbjct 647 TCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAA 588
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| || | || | ||||||||||| |||||||| || |||
Sbjct 587 ATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 528
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | || |||||| |||| || ||||| || || ||||| ||||| |||
Sbjct 527 TCGATGGTGTCGCTGGGCTCAACGTCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACA 468
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 467 AAGATCTGCATA 456
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || | || | || ||
Sbjct 437 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCG 378
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || || || || | || | |||||||||||
Sbjct 377 AGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGG 318
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||||| || ||| | || | || || ||| ||||||| ||| ||||| ||
Sbjct 317 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTG 258
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| ||||| ||||||||||||||
Sbjct 257 CCGGTGAGCGTCTTGACAAAGATCTGCAT 229
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || | || | || ||
Sbjct 209 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCG 150
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || || || || | || | |||||||||||
Sbjct 149 AGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGG 90
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|||||||| || || || || || | || || ||| ||||||| || ||||| |
Sbjct 89 ATCTTCTGCTTCAC--ATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTGATGGTCT 32
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || ||||| ||||| ||||||||||||||
Sbjct 31 TGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
>seq3754
Length=471
Score = 95.1 bits (104), Expect = 8e-15
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||||||||| || | || | || || ||||| || ||||| ||
Sbjct 191 TCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 132
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || || || || | || | ||||||||||| |||||||| || || ||
Sbjct 131 ATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCAC--AT 74
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | || || ||| ||||||| ||| || || || |||||||| |||||||
Sbjct 73 TCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCA 14
Query 34969 CAAAGATCTGCAT 34981
| |||||||||||
Sbjct 13 CGAAGATCTGCAT 1
>seq8082
Length=462
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || | || | || || ||||| || ||||| ||
Sbjct 191 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 132
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || || || || | || | ||||||||||| |||||| || |||
Sbjct 131 ATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTC 72
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || || ||| ||||||| ||| ||||| || |||||||| ||||| ||
Sbjct 71 TCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 12
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 11 AAGATCTGCAT 1
>seq5348
Length=435
Score = 87.8 bits (96), Expect = 1e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || || || | || | || || ||||| || ||||| ||
Sbjct 239 TCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 180
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || || || || | || | ||||||||||| ||||||||| || |||
Sbjct 179 ATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTC 120
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || || ||| ||||||| ||| || || || |||||||| ||||| |||
Sbjct 119 TCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTACCCGTGAGGGTCTTTACA 60
Query 34971 AAGATCTG 34978
||||||||
Sbjct 59 AAGATCTG 52
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324591012535392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |