Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7460 181 9e-41 seq8122 102 7e-17 >seq7460 Length=1425 Score = 181 bits (200), Expect = 9e-41 Identities = 425/636 (67%), Gaps = 4/636 (1%) Strand=Plus/Minus Query 29750 TGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 29809 |||| ||| | || |||| ||||| | ||||| | | ||||| ||| || || | Sbjct 1330 TGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCT 1271 Query 29810 CCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT- 29868 | ||||| | ||| | ||| ||| || | | ||||| ||||| ||||| | Sbjct 1270 CGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTC-CCCGGCGCGC 1212 Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || |||||| | || | || | |||||| || | ||| ||| ||||| ||||| Sbjct 1211 AGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGGC 1152 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || || ||||| ||||||| |||||| | || ||||||||||| || | | | Sbjct 1151 ACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGAC 1092 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048 ||||||||||| | ||||||| || || || ||||||||| || | ||| Sbjct 1091 ACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGCCGGG 1032 Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108 |||||||| | | ||| ||||| | ||| ||||| | ||||| || ||| | Sbjct 1031 TTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCAC-AAG 973 Query 30109 TTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGC 30167 | || ||||| || || ||| || | ||| || | |||| | ||||||| || Sbjct 972 CTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGTACTCGGC 913 Query 30168 TCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC 30227 || || || | ||||||||| ||||| || || || || || ||||| || | | | Sbjct 912 GCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGATCCGT 853 Query 30228 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30287 || ||| ||||||| | | | | ||| |||||| ||||||| || | | |||| Sbjct 852 GAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATGTCCTT 793 Query 30288 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30347 || ||| |||| | | ||| || || |||||| ||||| ||||| |||| Sbjct 792 TTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGGCGAC 733 Query 30348 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | | ||||||||| | ||||||||| || || || Sbjct 732 GCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGG 697 >seq8122 Length=2121 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 48361 TCTCGAGCACGAGCTGGGCTATCCTGTCACCCCTCTCGACCCGAAAGGGGTTGCACCCAA 48420 |||||||||||||||| || |||||||| || || ||| | || | | || Sbjct 1756 TCTCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGT 1697 Query 48421 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 48480 ||| || || | |||||||| ||| || | ||||||| |||| | || || || |||| Sbjct 1696 GGTTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGA 1637 Query 48481 CGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 48540 |||| || || ||| || || || |||| || ||||| | ||||||| ||||| Sbjct 1636 CGTCGATGTGCTTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCCG 1577 Query 48541 GGGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCG 48584 ||| | || ||||||| ||| ||||| || || || ||||| Sbjct 1576 CGGGGACCTGGACGGCCACGTCGGTCTTGACGAGCCCCTTGCCG 1533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408563994989372