Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7528 96.9 3e-15 seq5348 87.8 1e-12 >seq7528 Length=2088 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| ||| || || | | | || || | ||| Sbjct 203 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCGAGCTGC 144 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||||||||| || || ||||| || || || || || || Sbjct 143 TTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 84 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || ||| | || | ||||| || | || || || || |||| || |||||||| Sbjct 83 TGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTGATGGTCTTGCCGGTG 24 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 23 AGCGTCTTGACAAAGATCTGCAT 1 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| ||| || || | | | || || | ||| Sbjct 431 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGC 372 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||||||||||| || || ||||| || || || || || || Sbjct 371 TTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 312 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | ||||| || | || || || || |||| || |||||||| Sbjct 311 TGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCGGTG 252 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| ||||||||| Sbjct 251 AGCGTCTTGACAAAGATCTGCATG 228 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| ||| || || | | | || || | ||| Sbjct 1115 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGC 1056 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||||||||| || || ||||| || || || || || || Sbjct 1055 TTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 996 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | ||||| || | || || ||||| |||| || || ||||| Sbjct 995 TGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTG 936 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 935 AGCGTCTTGACGAAGATCTGCATG 912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || || || | | | || || | ||| Sbjct 887 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGC 828 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||||||||| || || ||||| || || || || || || Sbjct 827 TTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 768 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | ||||| || | || || ||||| |||| || || ||||| Sbjct 767 TGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTG 708 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 707 AGCGTCTTGACGAAGATCTGCATG 684 >seq5348 Length=435 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||||||| || || | | | || || | ||| Sbjct 251 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCGAGCTGC 192 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||||||||||| || || ||||| || || || ||||| || Sbjct 191 TTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTC 132 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | ||||| || | || || || || |||| || || || || Sbjct 131 TGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTACCCGTG 72 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCG 101478 | || |||||||| ||||| || || |||| Sbjct 71 AGGGTCTTTACAAAGATCTG--TGTTTCCGCG 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396226413722748