Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7528 82.4 6e-11 seq5348 82.4 6e-11 >seq7528 Length=2088 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || || ||||| || || | || Sbjct 218 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGG 159 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || || || ||||||||||| | ||| | ||||||| Sbjct 158 CCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCC 99 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || ||| | | | || || | ||| || || | ||| Sbjct 98 TTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTG 39 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 38 ATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1 >seq5348 Length=435 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || |||||||| || | || |||| || | |||| Sbjct 251 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCGAGCTGC 192 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||||||||| | ||| | |||||||||||| |||||| Sbjct 191 TTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTC 132 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || || | ||| || || | || || || || ||||| Sbjct 131 TGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTACCCGTG 72 Query 48744 AAAGTTTTTACAAAAATCTG 48763 | || |||||||| ||||| Sbjct 71 AGGGTCTTTACAAAGATCTG 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380887626224772