Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 457 2e-123
seq236 170 4e-37
>seq5216
Length=2424
Score = 457 bits (506), Expect = 2e-123
Identities = 1175/1757 (67%), Gaps = 87/1757 (5%)
Strand=Plus/Minus
Query 212690 ATGTAG--GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747
|||||| ||| || ||||| |||||| ||||| | | | | || ||||| | ||
Sbjct 2210 ATGTAGATGTTGAGCGACTGCGACTGGTCGATGAAGGCGCCGCGATCGGCGGCGAGATCG 2151
Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807
|||| | ||| || |||||| ||||||||| ||| | |||||||| || |||
Sbjct 2150 ATGAGGCAGCGCTGCTTGATCTCCCAGACGGTCTTGTAGAGCGCCTTGAGGTCGTCGGGG 2091
Query 212808 AAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCG 212867
| | || | ||||||||| || || | || | | ||| ||| ||| || |
Sbjct 2090 ATGGCGCCAACGTTCTGCACCGAGCCGCGGTCGGCCATGATCTGGTTGCGGATGGCCGGG 2031
Query 212868 TTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCA 212927
||||||| || | | ||| ||||| |||||| | |||||| | | ||| ||
Sbjct 2030 GTCCAGAGACCGCGCGAGATGAGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCG 1971
Query 212928 CCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTC 212987
|| | ||| || | | | ||| | ||| ||| ||||||| | | |||| |||
Sbjct 1970 CCAGCGAGGACGCGGCGCGAGTACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTG 1911
Query 212988 CCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACT 213047
|| |||||||| | || ||| ||||||||||| || ||||| || ||| | |||
Sbjct 1910 CCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACA 1851
Query 213048 CCGTGCTCGCCGATGAGGCGCCGAAGC----TCTGCCCAGTCCCATCTGCCAGACAGGTC 213103
||||||| || |||| |||| || || ||| |||||||||| ||| || ||
Sbjct 1850 CCGTGCT-GC--ATGACGCGCTGACGCAGCGTCT-CCCAGTCCCA---GCC---GAGCTC 1801
Query 213104 C---TCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160
| | | |||| ||||||| | ||| ||||| || |||| | ||||| |||| ||
Sbjct 1800 CGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGCCCTCGCTCA-TGGGCGACC 1742
Query 213161 CTGGTAAGAGG---AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC-CTGCAGGG 213216
| | || ||| ||| ||||| | ||||| ||||||||||| || || |||| ||
Sbjct 1741 C--GGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCGCACGAGGCGGTGCA-GG 1685
Query 213217 CAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGG------G 213270
| | |||||||||| || || || || | ||||||||| |||||| |||
Sbjct 1684 CGCCAAAGTAGATGGTCTCGAAGATGTCGCGGTTGAGCTTGCGGGCCTCCGGGCTCTCAA 1625
Query 213271 ACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGA 213330
| | |||| ||| | ||| || | ||| || || ||||| || || |||||||
Sbjct 1624 AGGGGAAGCGCAGCTCCAT------GAGCGCATTGGCGAGGCCCTGAACGCCAATGCCGA 1571
Query 213331 TGGGTCTGTGTCTCAGGTTAGACTTGG--AGCACTCCTCCAAGGGGTAAAAGTTGCAGTC 213388
|||| | ||| | | ||| || | | |||||| | |||||| ||||||| |||
Sbjct 1570 TGGGGCGGTGGCGCGTGTT--GCTGCGCTCGGCCTCCTCGACGGGGTAGAAGTTGCCGTC 1513
Query 213389 GATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACAT------GGGCCAGGTACTC 213442
||||| ||||||||| |||| | || |||||||||| ||||| || | ||
Sbjct 1512 GATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGTGACATCGTAGAGGGCCTGGAAGTC 1453
Query 213443 GTGATTGAACACGTAGCCCCCGTC---CTGCACAAACTCAGGCAGGGCGATGCTGGCCAG 213499
|| | || |||| | || | || |||| ||||| |||| ||| ||
Sbjct 1452 GT--------AGGT-GCCCTCCTCAATGTTGACGAACTTGCGCAGGTTGATGGAGGCGAG 1402
Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559
|||||| ||||| ||||| | || | | | |||||| ||||||||||||||||||||
Sbjct 1401 GTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGA 1342
Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGA 213618
| | |||| |||| ||||||| ||||| ||| ||||| | ||| | |||||| |||
Sbjct 1341 GGACTTGATGATGCCGAGGTTCTTCTGGTTCGAC-TTGCGGTTGCAGGCGTCCTTGAAGA 1283
Query 213619 GCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGG 213678
||||| | || |||||||| | |||| | ||| |||||| |||||||| |||||
Sbjct 1282 GCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTGGTACCAGAGGT-CCTGG 1224
Query 213679 CCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTG 213737
| | || | || | || ||| | | |||||| | ||||||||||| |||
Sbjct 1223 GC--GCGCA-TGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAGAGCTCCTTG 1167
Query 213738 AATTCGTGGCCCCAGACCCTGTCC---AGTCCC--GGACAGGATGCGGGACACATGAGGC 213792
|| |||| ||| |||| ||| || ||| || | | | |||| || | ||||
Sbjct 1166 AACTCGTCGCCGTAGAC---ATCCGAGAGGCCCTTGGCCTCG-TTCGGG-CAGAAGAGGG 1112
Query 213793 TCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852
||||| | || | ||| | |||||| || ||||| |||||||| || ||| ||
Sbjct 1111 TCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGGCGTAGA 1052
Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912
| ||||| | || | ||| ||| || ||| ||||| || || | |||||
Sbjct 1051 AGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAAGTCCT 992
Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGC 213969
|| ||| |||||||| ||||| | ||| ||||| |||| |||| | ||| |||||
Sbjct 991 CGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGC 932
Query 213970 CCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029
|||||||||| | ||| |||||||| ||| || | || || | ||||| |
Sbjct 931 CCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCG 872
Query 214030 ACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCC 214089
|||| |||||||| || || | || ||| ||||| | | |||| ||| || |
Sbjct 871 ACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTTGTGGATGTTGACGC 812
Query 214090 CTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTC-ACAGTCTCCATGATGCCG 214148
| ||||| ||||||||||||||||| |||||| | ||| | |||| | ||||||
Sbjct 811 CGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAG-GTCTCGAGCGTCTGGAAGATGCCC 753
Query 214149 GCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAG 214208
| || ||| || | | || || | |||||||||||| | || || | || | |
Sbjct 752 TCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGGTG 693
Query 214209 CCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAG 214268
|| | |||||| || || || |||| || | | ||||| | || | | ||||
Sbjct 692 CCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTAG 633
Query 214269 GTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATG 214328
||||| | | | |||||||||||||||||| | | | | ||| ||||||
Sbjct 632 GTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATGAGCATG 573
Query 214329 TGCTGGGGCCTCTCTATGGGTCCTTTGGGGC--CCTTGAGCAGGTAGGAGCGCTCCAGAG 214386
||||| || | ||| | | ||| | | ||||||||||||| |||||||| || |
Sbjct 572 TGCTGCGGGCGCTC--GGCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGAGCG 515
Query 214387 TCTTGAACCCAAAGTAG 214403
||||||| || ||| ||
Sbjct 514 TCTTGAAGCCGAAGAAG 498
>seq236
Length=1170
Score = 170 bits (188), Expect = 4e-37
Identities = 485/736 (66%), Gaps = 11/736 (1%)
Strand=Plus/Minus
Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016
||| | ||||||||| ||| |||||| | ||||||| || ||||||||| |||||
Sbjct 992 AGGCGGTCCGCGACGAACTTGATGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGC 933
Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
||||| | || | | || || || ||| |||| ||||| | | |||
Sbjct 932 TCGACGGGGAGCGCGTCCGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATC 873
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
| | ||||||| ||| ||| |||| | | ||||| |||||| ||| |||
Sbjct 872 TCGTGCACGCGGGCCTCGCTGGGCGGGTTG---ATGAGCTTGCGGAAGAGCAGGCAAGCA 816
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| |||||| ||| ||||| |||||||| | | | ||||||||| |||||| |||
Sbjct 815 AAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGC 756
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGAGAAGAAGATGCC 48255
|||| || | || ||||||||||| || || || |||| |||| ||||||||||||||
Sbjct 755 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAAAAGGAGCCCGAGAAGAAGATGCC 697
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGATCC 48314
||| || ||||| || || ||| | ||| | |||| || | | ||| | ||
Sbjct 696 CTCGACGGCCGCAAAACCGACGAGGCGCTCGGC-AAAGGTGCAGATGTTGCCGTCCATGT 638
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
|| | ||||| | ||||| | | ||| |||| ||| || | ||| |||||
Sbjct 637 AGCGCATGGCCCACTGCGCCTTTTGGCGCACGCAGGGCAGCGTGTCGAGGGCGTTGAAGA 578
Query 48375 GCTTCTTGCACTC-ACCTGC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432
| | || || ||||| ||| || ||||| || || | ||||| |||
Sbjct 577 G--GCCGGCCTTCTCCCTGCTGTCGCGAATGTAGGTGTCGATAAGGAGCGAGTACACCTC 520
Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492
||||| | ||||| || || |||||||| ||||||||| | ||||| ||
Sbjct 519 GGAGTGGATGTTCTCGATGGCCATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGCAGGCT 460
Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552
||| || || | || |||| | | ||||| || || || || || | || ||
Sbjct 459 CACCTCGCTGCAAAAGTTCTCGACGACGTTCTCGAGCACGATGCCGTCCGAGGACGCGAA 400
Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612
|||||| ||||| || || | || || ||||| | ||| | | | || |||
Sbjct 399 GAAGGCCAGGACGTGCTTGACAAAGTGCTGCTCGCCCTTGGTCATTGAGTCAAAGTCCTT 340
Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672
||| | ||||||||||| || || | |||||||| || || || || |||||
Sbjct 339 CTGGTCCTGGCCCAGGTCCATCTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTA 280
Query 48673 CATGCCCCATATGTCC 48688
| |||| ||||||
Sbjct 279 TGCGTCCCAGATGTCC 264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931407462261760
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