Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5216 457 2e-123 seq236 170 4e-37 >seq5216 Length=2424 Score = 457 bits (506), Expect = 2e-123 Identities = 1175/1757 (67%), Gaps = 87/1757 (5%) Strand=Plus/Minus Query 212690 ATGTAG--GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747 |||||| ||| || ||||| |||||| ||||| | | | | || ||||| | || Sbjct 2210 ATGTAGATGTTGAGCGACTGCGACTGGTCGATGAAGGCGCCGCGATCGGCGGCGAGATCG 2151 Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807 |||| | ||| || |||||| ||||||||| ||| | |||||||| || ||| Sbjct 2150 ATGAGGCAGCGCTGCTTGATCTCCCAGACGGTCTTGTAGAGCGCCTTGAGGTCGTCGGGG 2091 Query 212808 AAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCG 212867 | | || | ||||||||| || || | || | | ||| ||| ||| || | Sbjct 2090 ATGGCGCCAACGTTCTGCACCGAGCCGCGGTCGGCCATGATCTGGTTGCGGATGGCCGGG 2031 Query 212868 TTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCA 212927 ||||||| || | | ||| ||||| |||||| | |||||| | | ||| || Sbjct 2030 GTCCAGAGACCGCGCGAGATGAGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCG 1971 Query 212928 CCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTC 212987 || | ||| || | | | ||| | ||| ||| ||||||| | | |||| ||| Sbjct 1970 CCAGCGAGGACGCGGCGCGAGTACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTG 1911 Query 212988 CCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACT 213047 || |||||||| | || ||| ||||||||||| || ||||| || ||| | ||| Sbjct 1910 CCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACA 1851 Query 213048 CCGTGCTCGCCGATGAGGCGCCGAAGC----TCTGCCCAGTCCCATCTGCCAGACAGGTC 213103 ||||||| || |||| |||| || || ||| |||||||||| ||| || || Sbjct 1850 CCGTGCT-GC--ATGACGCGCTGACGCAGCGTCT-CCCAGTCCCA---GCC---GAGCTC 1801 Query 213104 C---TCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160 | | | |||| ||||||| | ||| ||||| || |||| | ||||| |||| || Sbjct 1800 CGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGCCCTCGCTCA-TGGGCGACC 1742 Query 213161 CTGGTAAGAGG---AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC-CTGCAGGG 213216 | | || ||| ||| ||||| | ||||| ||||||||||| || || |||| || Sbjct 1741 C--GGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCGCACGAGGCGGTGCA-GG 1685 Query 213217 CAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGG------G 213270 | | |||||||||| || || || || | ||||||||| |||||| ||| Sbjct 1684 CGCCAAAGTAGATGGTCTCGAAGATGTCGCGGTTGAGCTTGCGGGCCTCCGGGCTCTCAA 1625 Query 213271 ACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGA 213330 | | |||| ||| | ||| || | ||| || || ||||| || || ||||||| Sbjct 1624 AGGGGAAGCGCAGCTCCAT------GAGCGCATTGGCGAGGCCCTGAACGCCAATGCCGA 1571 Query 213331 TGGGTCTGTGTCTCAGGTTAGACTTGG--AGCACTCCTCCAAGGGGTAAAAGTTGCAGTC 213388 |||| | ||| | | ||| || | | |||||| | |||||| ||||||| ||| Sbjct 1570 TGGGGCGGTGGCGCGTGTT--GCTGCGCTCGGCCTCCTCGACGGGGTAGAAGTTGCCGTC 1513 Query 213389 GATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACAT------GGGCCAGGTACTC 213442 ||||| ||||||||| |||| | || |||||||||| ||||| || | || Sbjct 1512 GATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGTGACATCGTAGAGGGCCTGGAAGTC 1453 Query 213443 GTGATTGAACACGTAGCCCCCGTC---CTGCACAAACTCAGGCAGGGCGATGCTGGCCAG 213499 || | || |||| | || | || |||| ||||| |||| ||| || Sbjct 1452 GT--------AGGT-GCCCTCCTCAATGTTGACGAACTTGCGCAGGTTGATGGAGGCGAG 1402 Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 |||||| ||||| ||||| | || | | | |||||| |||||||||||||||||||| Sbjct 1401 GTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGA 1342 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGA 213618 | | |||| |||| ||||||| ||||| ||| ||||| | ||| | |||||| ||| Sbjct 1341 GGACTTGATGATGCCGAGGTTCTTCTGGTTCGAC-TTGCGGTTGCAGGCGTCCTTGAAGA 1283 Query 213619 GCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGG 213678 ||||| | || |||||||| | |||| | ||| |||||| |||||||| ||||| Sbjct 1282 GCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTGGTACCAGAGGT-CCTGG 1224 Query 213679 CCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTG 213737 | | || | || | || ||| | | |||||| | ||||||||||| ||| Sbjct 1223 GC--GCGCA-TGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAGAGCTCCTTG 1167 Query 213738 AATTCGTGGCCCCAGACCCTGTCC---AGTCCC--GGACAGGATGCGGGACACATGAGGC 213792 || |||| ||| |||| ||| || ||| || | | | |||| || | |||| Sbjct 1166 AACTCGTCGCCGTAGAC---ATCCGAGAGGCCCTTGGCCTCG-TTCGGG-CAGAAGAGGG 1112 Query 213793 TCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 ||||| | || | ||| | |||||| || ||||| |||||||| || ||| || Sbjct 1111 TCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGGCGTAGA 1052 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 | ||||| | || | ||| ||| || ||| ||||| || || | ||||| Sbjct 1051 AGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAAGTCCT 992 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGC 213969 || ||| |||||||| ||||| | ||| ||||| |||| |||| | ||| ||||| Sbjct 991 CGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGC 932 Query 213970 CCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029 |||||||||| | ||| |||||||| ||| || | || || | ||||| | Sbjct 931 CCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCG 872 Query 214030 ACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCC 214089 |||| |||||||| || || | || ||| ||||| | | |||| ||| || | Sbjct 871 ACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTTGTGGATGTTGACGC 812 Query 214090 CTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTC-ACAGTCTCCATGATGCCG 214148 | ||||| ||||||||||||||||| |||||| | ||| | |||| | |||||| Sbjct 811 CGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAG-GTCTCGAGCGTCTGGAAGATGCCC 753 Query 214149 GCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAG 214208 | || ||| || | | || || | |||||||||||| | || || | || | | Sbjct 752 TCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGGTG 693 Query 214209 CCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAG 214268 || | |||||| || || || |||| || | | ||||| | || | | |||| Sbjct 692 CCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTAG 633 Query 214269 GTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATG 214328 ||||| | | | |||||||||||||||||| | | | | ||| |||||| Sbjct 632 GTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATGAGCATG 573 Query 214329 TGCTGGGGCCTCTCTATGGGTCCTTTGGGGC--CCTTGAGCAGGTAGGAGCGCTCCAGAG 214386 ||||| || | ||| | | ||| | | ||||||||||||| |||||||| || | Sbjct 572 TGCTGCGGGCGCTC--GGCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGAGCG 515 Query 214387 TCTTGAACCCAAAGTAG 214403 ||||||| || ||| || Sbjct 514 TCTTGAAGCCGAAGAAG 498 >seq236 Length=1170 Score = 170 bits (188), Expect = 4e-37 Identities = 485/736 (66%), Gaps = 11/736 (1%) Strand=Plus/Minus Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | ||||||||| ||| |||||| | ||||||| || ||||||||| ||||| Sbjct 992 AGGCGGTCCGCGACGAACTTGATGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGC 933 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||| | || | | || || || ||| |||| ||||| | | ||| Sbjct 932 TCGACGGGGAGCGCGTCCGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATC 873 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | ||||||| ||| ||| |||| | | ||||| |||||| ||| ||| Sbjct 872 TCGTGCACGCGGGCCTCGCTGGGCGGGTTG---ATGAGCTTGCGGAAGAGCAGGCAAGCA 816 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| |||||| ||| ||||| |||||||| | | | ||||||||| |||||| ||| Sbjct 815 AAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGC 756 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGAGAAGAAGATGCC 48255 |||| || | || ||||||||||| || || || |||| |||| |||||||||||||| Sbjct 755 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAAAAGGAGCCCGAGAAGAAGATGCC 697 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGATCC 48314 ||| || ||||| || || ||| | ||| | |||| || | | ||| | || Sbjct 696 CTCGACGGCCGCAAAACCGACGAGGCGCTCGGC-AAAGGTGCAGATGTTGCCGTCCATGT 638 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 || | ||||| | ||||| | | ||| |||| ||| || | ||| ||||| Sbjct 637 AGCGCATGGCCCACTGCGCCTTTTGGCGCACGCAGGGCAGCGTGTCGAGGGCGTTGAAGA 578 Query 48375 GCTTCTTGCACTC-ACCTGC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | || || ||||| ||| || ||||| || || | ||||| ||| Sbjct 577 G--GCCGGCCTTCTCCCTGCTGTCGCGAATGTAGGTGTCGATAAGGAGCGAGTACACCTC 520 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || || |||||||| ||||||||| | ||||| || Sbjct 519 GGAGTGGATGTTCTCGATGGCCATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGCAGGCT 460 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || || | || |||| | | ||||| || || || || || | || || Sbjct 459 CACCTCGCTGCAAAAGTTCTCGACGACGTTCTCGAGCACGATGCCGTCCGAGGACGCGAA 400 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 |||||| ||||| || || | || || ||||| | ||| | | | || ||| Sbjct 399 GAAGGCCAGGACGTGCTTGACAAAGTGCTGCTCGCCCTTGGTCATTGAGTCAAAGTCCTT 340 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 ||| | ||||||||||| || || | |||||||| || || || || ||||| Sbjct 339 CTGGTCCTGGCCCAGGTCCATCTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTA 280 Query 48673 CATGCCCCATATGTCC 48688 | |||| |||||| Sbjct 279 TGCGTCCCAGATGTCC 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931407462261760