Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq236 190 4e-43 >seq236 Length=1170 Score = 190 bits (210), Expect = 4e-43 Identities = 398/583 (68%), Gaps = 24/583 (4%) Strand=Plus/Plus Query 25468 CACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAG 25527 ||| | || || ||||| ||||||||||| | ||| |||||| ||||| ||| Sbjct 259 CACCAGGACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAG 318 Query 25528 ATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTT 25587 || || |||| | ||||| | | | || || | | |||| | ||||||||| ||| Sbjct 319 ATGGACCTGGGCCAGGACCAGAAGGACTTTGACTCAATGACCAAGGGCGAGCAGCACTTT 378 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 ||||| |||| |||| ||||| || |||| || || || ||| |||||| | | Sbjct 379 GTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTGCTCGAGAACGTCGTC 438 Query 25648 GAGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAG 25704 |||| || ||| || ||| || | || ||||| || |||||||| |||||| Sbjct 439 GAGAACTTTTGCAGCGAGGTG-AG--CCTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAG 495 Query 25705 ATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATT 25761 ||||||||||| || | ||||| |||||||| | ||| || || || |||||| Sbjct 496 ATGGCCATCGAGAACATCCACTCCGAGGTGTACTC---GCTCCTTATCGACACCTACATT 552 Query 25762 ACAGACGTCGCCGAGAGAGATCGGC-TGTTTGGTGCCATCGAGCACA-TACCCAGCAT-- 25817 ||| | |||| || |||| | || ||| |||| ||| | ||| || | Sbjct 553 CGCGACAGCAGGGAGA-AGGCCGGCCTCTTCAACGCCCTCGA-CACGCTGCCCTGCGTGC 610 Query 25818 --CAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC 25875 ||| ||||||| |||||||||| | || || || | | | || |||| | Sbjct 611 GCCAA----AAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCACCTTTGCC 666 Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCC 25935 ||||| || || | ||||| || || ||||||||||| ||| || || ||| ||| Sbjct 667 GAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCC 726 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 ||||||||||||||| || || |||||| || || ||| ||||| ||| | ||| Sbjct 727 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATGAGATGATC 786 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 ||| | |||||||| | |||| || ||||| |||||||||| Sbjct 787 AGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCTCT 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928719823932160