Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq236 190 4e-43
>seq236
Length=1170
Score = 190 bits (210), Expect = 4e-43
Identities = 398/583 (68%), Gaps = 24/583 (4%)
Strand=Plus/Plus
Query 25468 CACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAG 25527
||| | || || ||||| ||||||||||| | ||| |||||| ||||| |||
Sbjct 259 CACCAGGACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAG 318
Query 25528 ATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTT 25587
|| || |||| | ||||| | | | || || | | |||| | ||||||||| |||
Sbjct 319 ATGGACCTGGGCCAGGACCAGAAGGACTTTGACTCAATGACCAAGGGCGAGCAGCACTTT 378
Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647
||||| |||| |||| ||||| || |||| || || || ||| |||||| | |
Sbjct 379 GTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTGCTCGAGAACGTCGTC 438
Query 25648 GAGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAG 25704
|||| || ||| || ||| || | || ||||| || |||||||| ||||||
Sbjct 439 GAGAACTTTTGCAGCGAGGTG-AG--CCTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAG 495
Query 25705 ATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATT 25761
||||||||||| || | ||||| |||||||| | ||| || || || ||||||
Sbjct 496 ATGGCCATCGAGAACATCCACTCCGAGGTGTACTC---GCTCCTTATCGACACCTACATT 552
Query 25762 ACAGACGTCGCCGAGAGAGATCGGC-TGTTTGGTGCCATCGAGCACA-TACCCAGCAT-- 25817
||| | |||| || |||| | || ||| |||| ||| | ||| || |
Sbjct 553 CGCGACAGCAGGGAGA-AGGCCGGCCTCTTCAACGCCCTCGA-CACGCTGCCCTGCGTGC 610
Query 25818 --CAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC 25875
||| ||||||| |||||||||| | || || || | | | || |||| |
Sbjct 611 GCCAA----AAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCACCTTTGCC 666
Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCC 25935
||||| || || | ||||| || || ||||||||||| ||| || || ||| |||
Sbjct 667 GAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCC 726
Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995
||||||||||||||| || || |||||| || || ||| ||||| ||| | |||
Sbjct 727 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATGAGATGATC 786
Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038
||| | |||||||| | |||| || ||||| ||||||||||
Sbjct 787 AGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCTCT 829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928719823932160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |