Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 89.7 3e-12
>seq7528
Length=2088
Score = 89.7 bits (98), Expect = 3e-12
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| || ||||| ||||| || || ||||| ||||||||||| || || || ||||||
Sbjct 839 TCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTG 780
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| || || || || || || || | | | |||||||| ||
Sbjct 779 TCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATG 720
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||| ||||| ||||| || ||
Sbjct 719 GTCTTCCCGGTGAGCGTCTTGACGAAGATCTG 688
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| || ||||| || || ||||||||||| ||||||||||| || || || ||||||
Sbjct 155 TCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCCTTG 96
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| || || ||| || || || || | | | || || || ||
Sbjct 95 TCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTGATG 36
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||| ||||| || || || ||
Sbjct 35 GTCTTGCCGGTGAGCGTCTTGACAAAGATCTG 4
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| || ||||| || || ||||||||||| || |||||||| ||||| || ||||||
Sbjct 611 TCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTG 552
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| || || || || || || || || | | || || || ||
Sbjct 551 TCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACGTCGAGAGTGATG 492
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||| ||||| || || || ||
Sbjct 491 GTCTTGCCGGTGAGCGTCTTGACAAAGATCTG 460
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| || || ||||| ||||| || || ||||| ||||||||||| || || || ||||||
Sbjct 1067 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTG 1008
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| || || || || || || || | | | |||||||| ||
Sbjct 1007 TCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATG 948
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||| ||||| ||||| || ||
Sbjct 947 GTCTTCCCGGTGAGCGTCTTGACGAAGATCTG 916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267717479813072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |