Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 159 4e-34
seq302 107 2e-18
seq236 91.5 2e-13
>seq5216
Length=2424
Score = 159 bits (176), Expect = 4e-34
Identities = 363/536 (68%), Gaps = 9/536 (2%)
Strand=Plus/Plus
Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270
||| ||| ||||| ||||||| ||| | ||||||||||| | | ||||| ||| |
Sbjct 564 CCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCACGACATCGATCGCGC 623
Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329
| | ||||| ||||||| |||||| || | || | |||| ||||| || || |||||||
Sbjct 624 CATCGAGACCTACGACATGATGTCGCAGAAGT-TCTTCACGCACGCCACGCCGACCCTCT 682
Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389
|||| || || || || | ||||| ||||| || |||||||| | || ||||| |
Sbjct 683 TCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGCTGCTTCCTCGTGCACATGAAGGACG 742
Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449
|||| ||| | || |||| || || | || |||| ||||| |||| || |
Sbjct 743 ACTCGATCGAGGGCATCTTCCAGACGCTCGAGACCTGCGCGCGCATCTCCAAGTACGCCG 802
Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTCG-GGGGAC 75507
| || || || | ||||||| | | | ||| | | || ||| || ||
Sbjct 803 GCGGCATCGGCGTCAACATCCACAACATCCGCGCC--TCGGGCAGCTACGTCGCCGGCAC 860
Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567
|| || || || | || ||| | || ||||||||||| || |||| ||| || |||||
Sbjct 861 CAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCCCGCTA 920
Query 75568 TGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624
|| | || |||| ||| |||||||| ||| |||| | ||| | || || |||||
Sbjct 921 CGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCTTGGCA 980
Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684
||||| || ||| ||| ||||| | || ||||| || | || |||| ||
Sbjct 981 CGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 1040
Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740
| || ||||| | |||| ||| | || |||||||| ||| |||| || ||||
Sbjct 1041 CCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAGG 1096
>seq302
Length=2502
Score = 107 bits (118), Expect = 2e-18
Identities = 286/428 (67%), Gaps = 17/428 (4%)
Strand=Plus/Plus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
|| |||||||||||| ||||| || ||||| || || ||||| || ||||||||
Sbjct 1120 GGCGCCAAGATCCCCAAGGGCGCGCTCCTCGCCGGCCCTCCTGGTACCGGCAAGACCCTG 1179
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAA 175393
|| ||| || | |||||| || | | || || ||| || || | | | || || |
Sbjct 1180 CTGGCCAAGGCGACCGCGGGCGAGGCCAGCGTACCCTTCTTCTCCATTTC-CGGCAGCGA 1238
Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453
|||| | |||||||| || || || || || | || ||||||||||||| |
Sbjct 1239 -CTTTATTGAGATGTTCGTCGGCGTTGGCCCCTCGCGCGTGCGCGATCTCTTTGGCCAGG 1297
Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG-GCAAGCAA 175512
||||| | || || || || ||||||||||||||||| || || |||| || ||
Sbjct 1298 CCCGCAAGAACTCGCCCTGCATCGTCTTCATTGATGAGATCGACGCTGTGGCGCGCGC-G 1356
Query 175513 CGC----AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACT 175568
||| || || | | | | || || |||||| | || | || | || || ||
Sbjct 1357 CGCGGTAAGGGCGGCTTCAGCGGCGGC-AACGACGAGCGCGAGAACACCCTGAACCAGCT 1415
Query 175569 ACTCACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCAC 175625
||| || ||||| ||||| ||| ||| ||| | |||||| |||| | |||
Sbjct 1416 GCTCGTTGAAATGGACGGCTTCACCTCCAAGGAG---GGCGTCGTGGTTCTTGCTGGCAC 1472
Query 175626 TAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGAT 175685
|| ||||| || || || || |||| | || ||||| || || ||||| |||| ||
Sbjct 1473 CAACCGCGTCGACATTCTCGACCCCGCCATTCTGCGCCCCGGCCGCTTTGACCGCACCAT 1532
Query 175686 CCAAGTGG 175693
| | ||||
Sbjct 1533 CAACGTGG 1540
>seq236
Length=1170
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125
|| |||| ||||||||||| | | |||||| || ||||| ||||||||||| || |
Sbjct 656 GCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCT 715
Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185
| || ||||| || | ||| | |||||||| || |||||||| || || |||||| |
Sbjct 716 CCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCA 775
Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
|||| | || ||| || ||||| | ||| || |||||
Sbjct 776 ATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGC 818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596489331560320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |