Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5216 159 4e-34 seq302 107 2e-18 seq236 91.5 2e-13 >seq5216 Length=2424 Score = 159 bits (176), Expect = 4e-34 Identities = 363/536 (68%), Gaps = 9/536 (2%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| ||| | ||||||||||| | | ||||| ||| | Sbjct 564 CCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCACGACATCGATCGCGC 623 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | | ||||| ||||||| |||||| || | || | |||| ||||| || || ||||||| Sbjct 624 CATCGAGACCTACGACATGATGTCGCAGAAGT-TCTTCACGCACGCCACGCCGACCCTCT 682 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || || || | ||||| ||||| || |||||||| | || ||||| | Sbjct 683 TCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGCTGCTTCCTCGTGCACATGAAGGACG 742 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 |||| ||| | || |||| || || | || |||| ||||| |||| || | Sbjct 743 ACTCGATCGAGGGCATCTTCCAGACGCTCGAGACCTGCGCGCGCATCTCCAAGTACGCCG 802 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTCG-GGGGAC 75507 | || || || | ||||||| | | | ||| | | || ||| || || Sbjct 803 GCGGCATCGGCGTCAACATCCACAACATCCGCGCC--TCGGGCAGCTACGTCGCCGGCAC 860 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || || || | || ||| | || ||||||||||| || |||| ||| || ||||| Sbjct 861 CAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCCCGCTA 920 Query 75568 TGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 || | || |||| ||| |||||||| ||| |||| | ||| | || || ||||| Sbjct 921 CGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCTTGGCA 980 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 ||||| || ||| ||| ||||| | || ||||| || | || |||| || Sbjct 981 CGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 1040 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | || ||||| | |||| ||| | || |||||||| ||| |||| || |||| Sbjct 1041 CCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAGG 1096 >seq302 Length=2502 Score = 107 bits (118), Expect = 2e-18 Identities = 286/428 (67%), Gaps = 17/428 (4%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 1120 GGCGCCAAGATCCCCAAGGGCGCGCTCCTCGCCGGCCCTCCTGGTACCGGCAAGACCCTG 1179 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAA 175393 || ||| || | |||||| || | | || || ||| || || | | | || || | Sbjct 1180 CTGGCCAAGGCGACCGCGGGCGAGGCCAGCGTACCCTTCTTCTCCATTTC-CGGCAGCGA 1238 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 |||| | |||||||| || || || || || | || ||||||||||||| | Sbjct 1239 -CTTTATTGAGATGTTCGTCGGCGTTGGCCCCTCGCGCGTGCGCGATCTCTTTGGCCAGG 1297 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG-GCAAGCAA 175512 ||||| | || || || || ||||||||||||||||| || || |||| || || Sbjct 1298 CCCGCAAGAACTCGCCCTGCATCGTCTTCATTGATGAGATCGACGCTGTGGCGCGCGC-G 1356 Query 175513 CGC----AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACT 175568 ||| || || | | | | || || |||||| | || | || | || || || Sbjct 1357 CGCGGTAAGGGCGGCTTCAGCGGCGGC-AACGACGAGCGCGAGAACACCCTGAACCAGCT 1415 Query 175569 ACTCACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCAC 175625 ||| || ||||| ||||| ||| ||| ||| | |||||| |||| | ||| Sbjct 1416 GCTCGTTGAAATGGACGGCTTCACCTCCAAGGAG---GGCGTCGTGGTTCTTGCTGGCAC 1472 Query 175626 TAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGAT 175685 || ||||| || || || || |||| | || ||||| || || ||||| |||| || Sbjct 1473 CAACCGCGTCGACATTCTCGACCCCGCCATTCTGCGCCCCGGCCGCTTTGACCGCACCAT 1532 Query 175686 CCAAGTGG 175693 | | |||| Sbjct 1533 CAACGTGG 1540 >seq236 Length=1170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 || |||| ||||||||||| | | |||||| || ||||| ||||||||||| || | Sbjct 656 GCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCT 715 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | || ||||| || | ||| | |||||||| || |||||||| || || |||||| | Sbjct 716 CCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCA 775 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 |||| | || ||| || ||||| | ||| || ||||| Sbjct 776 ATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGC 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596489331560320