Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq5348 150 2e-31 seq8082 149 8e-31 seq7528 145 1e-29 seq3754 138 1e-27 seq5216 111 2e-19 seq302 100 4e-16 >seq5348 Length=435 Score = 150 bits (166), Expect = 2e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 171865 CAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGAC 171924 || |||||||| || ||||| || || || |||||||||||||| || ||| | || ||| Sbjct 52 CAGATCTTTGTAAAGACCCTCACGGGTAAGACTATCACCCTCGATGTCGAGCCCTCGGAC 111 Query 171925 ACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAA 171984 || ||||| ||| | || |||||||| || ||||| ||||| || || ||||| || Sbjct 112 ACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACAG 171 Query 171985 CGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTT 172044 || || || || || || || ||||| || || || || || ||| ||||||||| | Sbjct 172 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACATC 231 Query 172045 CAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 || |||||||| || || ||||| || || | || || ||||||| Sbjct 232 CAGAAGGAGTCCACCCTGCACCTCGTGCTCCGCCTCCGCGGTGGTG 277 >seq8082 Length=462 Score = 149 bits (164), Expect = 8e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||||||||| || ||| | || Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || |||||||||| || ||||| ||||| || || ||||| Sbjct 61 GACACGATCGAGAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||| || || || || ||||| || || || || || ||| || |||||| Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 180 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || ||||| || || Sbjct 181 ATCCAGAAGGAGTCCACCCTCCACCTCGTGCT 212 >seq7528 Length=2088 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || || || || || ||||||||||| || ||| | || Sbjct 229 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTCG 288 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || ||||| || || ||||| ||||| || || ||||| Sbjct 289 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 348 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||| || ||||| || ||||| || || || || || ||| || |||||| Sbjct 349 CAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 408 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | || || |||||| Sbjct 409 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGT 456 >seq3754 Length=471 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || |||||||||||||| || ||| | || Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || ||||| || || ||||| ||||| || || ||||| Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||| || || || || ||||| || || || || || || || || ||| Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || |||||||| || || ||||| || || | || || ||||||| Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGTGGTGGTG 229 >seq5216 Length=2424 Score = 111 bits (122), Expect = 2e-19 Identities = 337/520 (65%), Gaps = 3/520 (1%) Strand=Plus/Plus Query 78242 GGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCA 78301 || || || || ||||| | || ||| | ||||||||| | || ||||| | || || Sbjct 856 GGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCC 915 Query 78302 CGCTATGTCAACCAAGCGGGTCGTAGG---AAGGGGTCATTCGCTATGTACCTTGAACCT 78358 ||||| || |||| | || | | | ||||| || ||||| |||||||| || ||| Sbjct 916 CGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCT 975 Query 78359 TGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGTGACGAGGAAGCT 78418 ||||||||||| || ||| || | || || || ||||| || | ||||| | Sbjct 976 TGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTC 1035 Query 78419 CGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAG 78478 || | | || | ||| || | ||| | || || ||||||||| || | || ||| Sbjct 1036 CGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAG 1095 Query 78479 GAAGGAGGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAGATGTATAC 78538 | | | ||| | || ||||| || | || | ||||| || || ||||| ||| Sbjct 1096 GCCAACAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAGGGCCTCTCGGATGTCTAC 1155 Query 78539 GGGGAAGAATTCGAAAAATTGTACACTAAATACGAAGAGGAAGGTCTCGCTATTAAGACA 78598 || || || ||| | | | ||| ||||| |||| || | || ||||| Sbjct 1156 GGCGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGCCGCGGCCGCAAGACC 1215 Query 78599 ATTGATGCATCTGAACTATGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCCCG 78658 || || || || ||| | || | | | || | ||||||||| ||| Sbjct 1216 ATGCGCGCCCAGGACCTCTGGTACCAGATCCTGAGCTGCCAGATCGAGACCGGCGTGCCG 1275 Query 78659 TATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCATC 78718 | ||||| | ||| ||| ||| ||| | ||||| ||||| |||||||| || ||||| Sbjct 1276 TTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGCATCATC 1335 Query 78719 AAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACACGG 78758 || ||| ||||| ||||| || || | || ||| ||| Sbjct 1336 AAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGG 1375 >seq302 Length=2502 Score = 100 bits (110), Expect = 4e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 198558 GGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCG 198617 || || || |||||||| | || ||||| || || ||||| || || || | |||| Sbjct 1138 GGCGCGCTCCTCGCCGGCCCTCCTGGTACCGGCAAGACCCTGCTGGCCAAGGCGACCGCG 1197 Query 198618 GGTGAATCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCG 198675 || || | || || ||||| ||| || | | | || |||| ||| || |||||||||| Sbjct 1198 GGCGAGGCCAGCGTACCCTTCTTCTCCATTTC-CGGCAGCGACTTT-ATTGAGATGTTCG 1255 Query 198676 TTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCAT 198735 | || ||||| | |||||| || || ||||||| || || || | || || | Sbjct 1256 TCGGCGTTGGCCCCTCGCGCGTGCGCGATCTCTTTGGCCAGGCCCGCAAGAACTCGCCCT 1315 Query 198736 GTATCATCTTCATTGATGAGATTGACGCTGT 198766 | ||| |||||||||||||||| |||||||| Sbjct 1316 GCATCGTCTTCATTGATGAGATCGACGCTGT 1346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657773884614080