Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq5348 150 2e-31
seq8082 149 8e-31
seq7528 145 1e-29
seq3754 138 1e-27
seq5216 111 2e-19
seq302 100 4e-16
>seq5348
Length=435
Score = 150 bits (166), Expect = 2e-31
Identities = 169/226 (75%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 171865 CAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGAC 171924
|| |||||||| || ||||| || || || |||||||||||||| || ||| | || |||
Sbjct 52 CAGATCTTTGTAAAGACCCTCACGGGTAAGACTATCACCCTCGATGTCGAGCCCTCGGAC 111
Query 171925 ACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAA 171984
|| ||||| ||| | || |||||||| || ||||| ||||| || || ||||| ||
Sbjct 112 ACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACAG 171
Query 171985 CGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTT 172044
|| || || || || || || ||||| || || || || || ||| ||||||||| |
Sbjct 172 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACATC 231
Query 172045 CAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090
|| |||||||| || || ||||| || || | || || |||||||
Sbjct 232 CAGAAGGAGTCCACCCTGCACCTCGTGCTCCGCCTCCGCGGTGGTG 277
>seq8082
Length=462
Score = 149 bits (164), Expect = 8e-31
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || || ||||||||||| || ||| | ||
Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| | || |||||||||| || ||||| ||||| || || |||||
Sbjct 61 GACACGATCGAGAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || ||||| || || || || ||||| || || || || || ||| || ||||||
Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 180
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
| || |||||||| || || ||||| || ||
Sbjct 181 ATCCAGAAGGAGTCCACCCTCCACCTCGTGCT 212
>seq7528
Length=2088
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| |||||||| || || || || || || || ||||||||||| || ||| | ||
Sbjct 229 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTCG 288
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| | || ||||| || || ||||| ||||| || || |||||
Sbjct 289 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 348
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || ||||| || ||||| || ||||| || || || || || ||| || ||||||
Sbjct 349 CAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 408
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| || |||||||| || || ||||| || || | || || ||||||
Sbjct 409 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGT 456
>seq3754
Length=471
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| ||||| ||||| || || || |||||||||||||| || ||| | ||
Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || | || ||||| || || ||||| ||||| || || |||||
Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || ||||| || || || || ||||| || || || || || || || || |||
Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090
| || |||||||| || || ||||| || || | || || |||||||
Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGTGGTGGTG 229
>seq5216
Length=2424
Score = 111 bits (122), Expect = 2e-19
Identities = 337/520 (65%), Gaps = 3/520 (1%)
Strand=Plus/Plus
Query 78242 GGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCA 78301
|| || || || ||||| | || ||| | ||||||||| | || ||||| | || ||
Sbjct 856 GGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCC 915
Query 78302 CGCTATGTCAACCAAGCGGGTCGTAGG---AAGGGGTCATTCGCTATGTACCTTGAACCT 78358
||||| || |||| | || | | | ||||| || ||||| |||||||| || |||
Sbjct 916 CGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCT 975
Query 78359 TGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGTGACGAGGAAGCT 78418
||||||||||| || ||| || | || || || ||||| || | ||||| |
Sbjct 976 TGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTC 1035
Query 78419 CGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAG 78478
|| | | || | ||| || | ||| | || || ||||||||| || | || |||
Sbjct 1036 CGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAG 1095
Query 78479 GAAGGAGGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAGATGTATAC 78538
| | | ||| | || ||||| || | || | ||||| || || ||||| |||
Sbjct 1096 GCCAACAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAGGGCCTCTCGGATGTCTAC 1155
Query 78539 GGGGAAGAATTCGAAAAATTGTACACTAAATACGAAGAGGAAGGTCTCGCTATTAAGACA 78598
|| || || ||| | | | ||| ||||| |||| || | || |||||
Sbjct 1156 GGCGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGCCGCGGCCGCAAGACC 1215
Query 78599 ATTGATGCATCTGAACTATGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCCCG 78658
|| || || || ||| | || | | | || | ||||||||| |||
Sbjct 1216 ATGCGCGCCCAGGACCTCTGGTACCAGATCCTGAGCTGCCAGATCGAGACCGGCGTGCCG 1275
Query 78659 TATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCATC 78718
| ||||| | ||| ||| ||| ||| | ||||| ||||| |||||||| || |||||
Sbjct 1276 TTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGCATCATC 1335
Query 78719 AAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACACGG 78758
|| ||| ||||| ||||| || || | || ||| |||
Sbjct 1336 AAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGG 1375
>seq302
Length=2502
Score = 100 bits (110), Expect = 4e-16
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 198558 GGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCG 198617
|| || || |||||||| | || ||||| || || ||||| || || || | ||||
Sbjct 1138 GGCGCGCTCCTCGCCGGCCCTCCTGGTACCGGCAAGACCCTGCTGGCCAAGGCGACCGCG 1197
Query 198618 GGTGAATCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCG 198675
|| || | || || ||||| ||| || | | | || |||| ||| || ||||||||||
Sbjct 1198 GGCGAGGCCAGCGTACCCTTCTTCTCCATTTC-CGGCAGCGACTTT-ATTGAGATGTTCG 1255
Query 198676 TTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCAT 198735
| || ||||| | |||||| || || ||||||| || || || | || || |
Sbjct 1256 TCGGCGTTGGCCCCTCGCGCGTGCGCGATCTCTTTGGCCAGGCCCGCAAGAACTCGCCCT 1315
Query 198736 GTATCATCTTCATTGATGAGATTGACGCTGT 198766
| ||| |||||||||||||||| ||||||||
Sbjct 1316 GCATCGTCTTCATTGATGAGATCGACGCTGT 1346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657773884614080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |