Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq990 84.2 6e-11 >seq990 Length=4953 Score = 84.2 bits (92), Expect = 6e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 302629 GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT 302688 || || || || ||||| | || || ||||| || ||||| | | ||| | ||| Sbjct 2498 GCCGTGTCGATGAGACCCTCGCGGCCGCCCATGGCGTGGAAATAGAACTCCTGCGGCGAG 2439 Query 302689 AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTG 302748 || ||| | ||||| |||| ||||| || |||| ||||||| |||| |||| Sbjct 2438 AGGCCCTTGAGGTAGGAGTTCTCCACGAAGCCGCGCGACTCGGGCCCGAGGTCGTCCTTG 2379 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 |||||| || || || | || | |||| | ||||| |||| || || ||||| Sbjct 2378 TGAAAGTGCGGGAGCGTGCGGTAGCGAAAGCCAAAGGGGATGCGCTGGCCCTCGACGTTT 2319 Query 302809 TGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||| || | ||| || ||||| ||||| || | | |||||||||||||| Sbjct 2318 TGCTGGCCGACGCAGCCCATGATCTGGGAAATGTTGATAAAGCTGCCCTTGGAGCC 2263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471614616115468