Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 120 3e-22
seq3754 109 5e-19
seq5216 104 2e-17
seq8082 93.3 4e-14
>seq7528
Length=2088
Score = 120 bits (132), Expect = 3e-22
Identities = 168/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || ||||| ||||| || || || |||||||| || || || |
Sbjct 1 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACGCTCGATGTCGAGCCCTCG 60
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || |||||||| ||||| || || || || || ||||||
Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880
|| ||| | || || ||||| || ||||| || || || | || | ||| || ||
Sbjct 121 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGA--CG-GCCGCACGCTCAGCGACTAC 177
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| || ||||| || || || ||| ||||| | || ||||||| |||
Sbjct 178 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGC 228
Score = 114 bits (126), Expect = 1e-20
Identities = 166/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || ||||| ||||| || || || || ||||| || || || |
Sbjct 229 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTCG 288
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || |||||||| ||||| || || || || || ||||||
Sbjct 289 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 348
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880
|| || | ||||| || || || ||||| ||||| || | || | ||| || ||
Sbjct 349 CAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGA--CG-GCCGCACGCTCAGCGACTAC 405
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| || ||||| || || || ||| ||||| | || ||||||| ||
Sbjct 406 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGG 455
Score = 111 bits (122), Expect = 1e-19
Identities = 166/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || ||||| ||||| || || || || ||||| || || ||| |
Sbjct 457 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTCGACGTTGAGCCCAGC 516
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || |||||||| ||||| || || || || || |||||
Sbjct 517 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 576
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880
|| ||| | || || ||||| || ||||| || || || | || | ||| || ||
Sbjct 577 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGA--CG-GCCGCACGCTCAGTGACTAC 633
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| || ||||| || || || ||| | ||| | || ||||||| |||
Sbjct 634 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 684
Score = 105 bits (116), Expect = 6e-18
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||||| ||||| || || || || || || || || || |
Sbjct 913 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 972
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || |||||||| ||||| || || || || || ||||||
Sbjct 973 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 1032
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880
|| ||| | ||||| || || || ||||| ||||| || | || | ||| || ||
Sbjct 1033 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGA--CG-GCCGCACGCTCAGCGACTAC 1089
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| || ||||| || || || ||| | ||| | || ||||||| ||
Sbjct 1090 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 1139
Score = 102 bits (112), Expect = 7e-17
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||||| ||||| || || || || || || || || || |
Sbjct 685 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 744
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || |||||||| ||||| || || || || || ||||||
Sbjct 745 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 804
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880
|| ||| | ||||| || || || ||||| || || || | || | ||| || ||
Sbjct 805 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGA--CG-GCCGCACGCTCAGTGACTAC 861
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| || ||||| || || || ||| | ||| | || ||||||| |||
Sbjct 862 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 912
>seq3754
Length=471
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || ||||| || ||||| || || || |
Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || |||||||| ||||| || || || || || ||||||
Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | ||||| ||||| || ||||| ||||| | | || || ||||||
Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| || ||||| ||||| || ||| |||||
Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTG 210
>seq5216
Length=2424
Score = 104 bits (114), Expect = 2e-17
Identities = 328/495 (66%), Gaps = 15/495 (3%)
Strand=Plus/Minus
Query 139504 ACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT--- 139560
||||| |||||||| || || || || ||||| | | ||| || || ||||| ||
Sbjct 989 ACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGCCC 930
Query 139561 TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCG-C 139619
|| || |||| || | | | ||||| ||||| | ||| ||| | | ||| ||| |
Sbjct 929 TGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCGAC 870
Query 139620 TGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAG-CTCGGACGTCATGTACATTGATGC 139678
|| |||||||||| || | ||| |||| | |||| || || | |||| ||
Sbjct 869 TGG-CCGTTGGTGCCGGCGACGTAGCTGCC-CGAGGCGCGGATGTTGTGGATGTTGACGC 812
Query 139679 CGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCT 139737
|||| |||||| | | ||||| || |||| || || | |||| | | || ||
Sbjct 811 CGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCG-AGCGTCTGGAAGATGCCC 753
Query 139738 CTTATGCTGTCGTCCTGCATCGTG-ACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGT 139796
|| |||||||| ||| ||| || || ||||| ||| | |||||| | ||
Sbjct 752 TCGATCGAGTCGTCCTTCAT-GTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGGT 694
Query 139797 GCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTA 139856
|||||| || || || || | ||||||||||| | | | |||||||| |||||
Sbjct 693 GCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTA 634
Query 139857 CGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGATACCGACAGAGACTCGCATCAGC 139914
|| |||||||||| | || || ||| |||||| ||||| ||||| ||||| |||
Sbjct 633 GGTCTCGATGGCGCGATCGATGTCGTGCTT--GTGGATGCCGACGGAGACGCGCATGAGC 576
Query 139915 ATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGG 139974
|| || || || ||||| | | ||| || | || ||| || | ||| ||
Sbjct 575 ATGTGCTGCGGGCGCTCGGCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGAGC 516
Query 139975 GTCTTGTAGCCAAAG 139989
|||||| |||| |||
Sbjct 515 GTCTTGAAGCCGAAG 501
>seq8082
Length=462
Score = 93.3 bits (102), Expect = 4e-14
Identities = 163/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || ||||| || || || ||||| || || || |
Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || || || ||||||
Sbjct 61 GACACGATCGAGAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880
|| || | ||||| ||||| || ||||| ||||| || | || | ||| || ||
Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGA--CG-GCCGCACGCTCAGCGACTAC 177
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933
||||| || ||||| || || || ||| | ||| | || | ||||| |||||
Sbjct 178 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGG 230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449837066277920
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