Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7528 120 3e-22 seq3754 109 5e-19 seq5216 104 2e-17 seq8082 93.3 4e-14 >seq7528 Length=2088 Score = 120 bits (132), Expect = 3e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || || || |||||||| || || || | Sbjct 1 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACGCTCGATGTCGAGCCCTCG 60 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || |||||| Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880 || ||| | || || ||||| || ||||| || || || | || | ||| || || Sbjct 121 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGA--CG-GCCGCACGCTCAGCGACTAC 177 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| ||||| | || ||||||| ||| Sbjct 178 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGC 228 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || || || || ||||| || || || | Sbjct 229 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTCG 288 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || |||||| Sbjct 289 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 348 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880 || || | ||||| || || || ||||| ||||| || | || | ||| || || Sbjct 349 CAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGA--CG-GCCGCACGCTCAGCGACTAC 405 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || || || ||| ||||| | || ||||||| || Sbjct 406 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGG 455 Score = 111 bits (122), Expect = 1e-19 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || || || || ||||| || || ||| | Sbjct 457 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTCGACGTTGAGCCCAGC 516 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || ||||| Sbjct 517 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 576 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880 || ||| | || || ||||| || ||||| || || || | || | ||| || || Sbjct 577 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGA--CG-GCCGCACGCTCAGTGACTAC 633 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| | ||| | || ||||||| ||| Sbjct 634 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 684 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || || || || || || || | Sbjct 913 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 972 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || |||||| Sbjct 973 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 1032 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880 || ||| | ||||| || || || ||||| ||||| || | || | ||| || || Sbjct 1033 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGA--CG-GCCGCACGCTCAGCGACTAC 1089 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || || || ||| | ||| | || ||||||| || Sbjct 1090 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 1139 Score = 102 bits (112), Expect = 7e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || || || || || || || | Sbjct 685 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 744 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || |||||| Sbjct 745 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 804 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880 || ||| | ||||| || || || ||||| || || || | || | ||| || || Sbjct 805 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGA--CG-GCCGCACGCTCAGTGACTAC 861 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| | ||| | || ||||||| ||| Sbjct 862 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 912 >seq3754 Length=471 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || ||||| || || || | Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || |||||| Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| ||||| | | || || |||||| Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||| ||||| Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTG 210 >seq5216 Length=2424 Score = 104 bits (114), Expect = 2e-17 Identities = 328/495 (66%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 139504 ACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT--- 139560 ||||| |||||||| || || || || ||||| | | ||| || || ||||| || Sbjct 989 ACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGCCC 930 Query 139561 TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCG-C 139619 || || |||| || | | | ||||| ||||| | ||| ||| | | ||| ||| | Sbjct 929 TGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCGAC 870 Query 139620 TGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAG-CTCGGACGTCATGTACATTGATGC 139678 || |||||||||| || | ||| |||| | |||| || || | |||| || Sbjct 869 TGG-CCGTTGGTGCCGGCGACGTAGCTGCC-CGAGGCGCGGATGTTGTGGATGTTGACGC 812 Query 139679 CGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCT 139737 |||| |||||| | | ||||| || |||| || || | |||| | | || || Sbjct 811 CGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCG-AGCGTCTGGAAGATGCCC 753 Query 139738 CTTATGCTGTCGTCCTGCATCGTG-ACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGT 139796 || |||||||| ||| ||| || || ||||| ||| | |||||| | || Sbjct 752 TCGATCGAGTCGTCCTTCAT-GTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGGT 694 Query 139797 GCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTA 139856 |||||| || || || || | ||||||||||| | | | |||||||| ||||| Sbjct 693 GCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTA 634 Query 139857 CGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGATACCGACAGAGACTCGCATCAGC 139914 || |||||||||| | || || ||| |||||| ||||| ||||| ||||| ||| Sbjct 633 GGTCTCGATGGCGCGATCGATGTCGTGCTT--GTGGATGCCGACGGAGACGCGCATGAGC 576 Query 139915 ATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGG 139974 || || || || ||||| | | ||| || | || ||| || | ||| || Sbjct 575 ATGTGCTGCGGGCGCTCGGCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGAGC 516 Query 139975 GTCTTGTAGCCAAAG 139989 |||||| |||| ||| Sbjct 515 GTCTTGAAGCCGAAG 501 >seq8082 Length=462 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| || || || ||||| || || || | Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || |||||| Sbjct 61 GACACGATCGAGAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880 || || | ||||| ||||| || ||||| ||||| || | || | ||| || || Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGA--CG-GCCGCACGCTCAGCGACTAC 177 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||| || ||||| || || || ||| | ||| | || | ||||| ||||| Sbjct 178 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449837066277920