Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5348 89.7 1e-12 >seq5348 Length=435 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || || ||||| || | | ||| Sbjct 263 CGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCG 204 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | |||||||| || || || || ||||| Sbjct 203 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTG 144 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| ||||| || || || || || || || || || || | || || Sbjct 143 TCCTGAATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGAT 85 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 ||||| || || | ||||||||||| ||||| Sbjct 84 AGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981691792528996