Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 104 2e-17
seq5348 82.4 5e-11
>seq7528
Length=2088
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||| | || || ||| ||| || || |||||||| || |
Sbjct 683 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 624
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| |||| || | || || ||||| ||||| | |||||||||||| | ||
Sbjct 623 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGA 564
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || ||||| |||| | | || | ||||||||| | || ||
Sbjct 563 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCAAC 505
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||| | ||||| || || || || | ||| || |||||||||||||||
Sbjct 504 GTCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATA 456
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||| || || ||| ||| || || |||||||| ||| |
Sbjct 227 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| |||| || | || || ||||| ||||| | |||||| ||||| | ||
Sbjct 167 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGG 108
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || ||||| |||| ||| || | |||||| | || ||
Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CATTCTCGATGGTGTCCGAGGGCTCGAC 49
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | |||||| || || || || | ||| || ||||||||||||||
Sbjct 48 ATCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
>seq5348
Length=435
Score = 82.4 bits (90), Expect = 5e-11
Identities = 156/227 (69%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | || | ||| | || || ||| ||| || || ||||||||||||
Sbjct 277 CACCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGC 218
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
||| ||||| |||| || | || || ||||| || || | ||||| ||||| | |
Sbjct 217 TGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGG 158
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || || ||||| ||| ||||| ||| || | || | |||||| | ||
Sbjct 157 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCTCG 99
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746
|| || | ||||| || ||||| || | || ||||||||||||||
Sbjct 98 ACATCGAGGGTGATAGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 52
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328660878554880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |