Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq7460 82.4 8e-11 >seq7460 Length=1425 Score = 82.4 bits (90), Expect = 8e-11 Identities = 195/289 (67%), Gaps = 13/289 (4%) Strand=Plus/Plus Query 142561 ATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATG 142620 ||| || | || |||||||| || | || || |||||| || || || || |||||| Sbjct 1015 ATCCTCTCGGCCTGGAACCCGGCGGCGTTCCACCTCATGGCCCTGCCGCCCTGCCACATG 1074 Query 142621 ATGTTCCAATTCCACGTCGACTCGAAGAAGCGT-CTGTCATGCCAGCTGTATCAGCGTTC 142679 | || || |||| || ||| ||| || || ||||| |||| ||||| || Sbjct 1075 TTCGCGCAGTTTTACGTG---TCCAAGG-GCGAGCTCTCGTGCCAAATGTACCAGCGGTC 1130 Query 142680 GGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCACACAGCT 142739 || ||| ||| ||||| || ||||||||||| ||||||||||||||||| || | Sbjct 1131 GGGCGACATCGGCCTGGGCGTGCCCTTCAACATTGCCTCGTACGCGCTTCTCACGCATC- 1189 Query 142740 CATTGCTCGCGAA-TG---CGGTCTGGAACTCGGAGACTTCGTCCACACCTTCGGCAATT 142795 ||||||| || || ||| ||| ||| || ||| ||||| | ||||| | | Sbjct 1190 ---TGCTCGCAAAGTGCACCGGCCTGCGCGCCGGGGAGTTCATCCACGTCATCGGCGACT 1246 Query 142796 CGCACATCTACGATACACACGAAGAAGCTGTGAAAGAACAACTCAGCCG 142844 ||||| ||| | | |||| || | | || ||||| || | ||| Sbjct 1247 GCCACATTTACAAAAACCACGTCGAGCCCCTCAAGGAACAGCTTAACCG 1295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500431857832640