Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5216 226 3e-54 seq7528 93.3 4e-14 seq236 89.7 5e-13 seq3754 86.0 6e-12 seq8082 84.2 2e-11 seq5348 84.2 2e-11 >seq5216 Length=2424 Score = 226 bits (250), Expect = 3e-54 Identities = 638/969 (66%), Gaps = 27/969 (3%) Strand=Plus/Minus Query 147462 GATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGC 147521 ||| || || || ||||||||||| ||| || | | | ||||| | ||| |||| Sbjct 1413 GATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGT 1354 Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581 ||||||||| | | || |||| || | || | ||| || || || ||||| || Sbjct 1353 GCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGC 1294 Query 147582 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA-CTTGCGTTTCAACGATAA---ACC 147637 ||| |||||||||||| |||| |||||||||||| || || ||| ||| ||| Sbjct 1293 GTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAG-GATCTGGTACC 1235 Query 147638 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGT 147697 |||||||| || |||| || || ||||||||| || ||||| ||||||| Sbjct 1234 AG---AGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGT 1178 Query 147698 ACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACA 147757 | | | || ||||||||||||||| ||| | ||||| || | ||| || | Sbjct 1177 AGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCGGGCAGA 1118 Query 147758 TCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCG 147817 || | ||| || || || | || || ||||||| || || || ||||| || | Sbjct 1117 AGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGG 1058 Query 147818 CGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTT---GCGTTTCA-AATTA 147873 |||| | || ||||| || | ||||| ||| ||| ||| | ||| | Sbjct 1057 CGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGA 998 Query 147874 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC 147933 || | | || |||||||||||| || || | ||| | ||| | | || || ||| Sbjct 997 AGTCCTC----GACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGC 942 Query 147934 TTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCC 147990 || ||||| |||||| || | ||| | ||| ||| || ||||| | ||| || | Sbjct 941 TTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACA 882 Query 147991 AGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGC 148050 | |||| ||| |||||||||| || | |||||| ||| || | | ||| Sbjct 881 ATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTTGTGG 822 Query 148051 ACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTG 148110 | ||| ||||| ||||||||| ||||||| || ||| ||||| | | ||| | Sbjct 821 ATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTCTGG 762 Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGC---CAAGCAAAAAACACGAACACATTTGC 148167 ||||||| ||||| ||||| || | | | || || | | ||| ||||||| Sbjct 761 AAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGA---CATTTGC 705 Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227 || | || || || ||| ||||| || | |||||||| || || || || | Sbjct 704 GGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGAC 645 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 |||||| || ||||| || ||| |||||||||| ||| ||||| | | |||| Sbjct 644 ATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACG 585 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCC 148346 ||||||||||||||||| || || ||||| | |||| || | |||||| || || Sbjct 584 CGCATGAGCATGTGCTGCGGGCGCTCGGCGATCTTG-CCGTCAACCTTGAGCAGGTACGA 526 Query 148347 ATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||||| || ||| | || ||| | | ||| || || || | ||||| || ||| Sbjct 525 GCGCTCGAGCGTCTTGAAGCCGAAGAAGTCGTACTCGAAGTCGCGGTCGTACTTGACGGC 466 Query 148407 CGCATCTAG 148415 ||| || || Sbjct 465 CGCGTCGAG 457 >seq7528 Length=2088 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||| | |||| || | | | ||||| || || |||||||||||||| | || Sbjct 221 CGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTG 162 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||||||||| || |||| | || |||||||||||||| || || ||||| Sbjct 161 CGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCC 102 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || |||| | || | || || | ||||| || |||| | Sbjct 101 TCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGC 42 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | || |||||||| Sbjct 41 GTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || | || || ||||||||||| || || | Sbjct 878 GACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCG 819 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||||||||| || || ||||| || || || || || || |||| Sbjct 818 AAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 759 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || || || || || || Sbjct 758 TTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTG 699 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 698 ACGAAGATCTGCATG 684 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||| | || || || |||||||| || || | Sbjct 1106 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 1047 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||||||||| || || ||||| || || || || || || |||| Sbjct 1046 AAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 987 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || || || || || || Sbjct 986 TTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTG 927 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 926 ACGAAGATCTGCATG 912 >seq236 Length=1170 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 46750 TCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGC 46808 |||| |||| |||| ||||| ||| ||||||| |||||||||||| | || || || Sbjct 590 TCGA-CACGCTGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGC 648 Query 46809 GAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttt 46868 | | | ||| | ||||||||| | || | || ||| ||||| ||| | || || Sbjct 649 AACATCTGCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTC 708 Query 46869 tCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACG 46928 |||||| ||| |||||| || | | || | ||| | |||||||| || || Sbjct 709 TCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACC 768 Query 46929 TTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 ||| || ||| ||||| |||||||| || | ||||| |||||||| || || Sbjct 769 TTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCT 824 >seq3754 Length=471 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||| || | | | ||||| || || ||||| |||||||||| || Sbjct 222 ACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGT 163 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || |||| |||| || ||||||||||| || || ||||| Sbjct 162 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCC 103 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || |||| | || | || || | ||||| || |||| Sbjct 102 CTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAG 43 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | ||| |||||||| Sbjct 42 GGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1 >seq8082 Length=462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||| | || || || |||||||| || |||| Sbjct 194 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 135 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||||||||| || || ||||| || || || ||| || |||| Sbjct 134 AAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACG 75 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || ||||| || || || || Sbjct 74 TTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTG 15 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 14 ACGAAGATCTGCAT 1 >seq5348 Length=435 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||| ||||| | || || || |||||||| || |||| Sbjct 242 GACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 183 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||||||||| || || ||||| || || || ||| || || |||| Sbjct 182 AAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 123 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || ||||| || || || ||| Sbjct 122 TTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTACCCGTGAGGGTCTTT 63 Query 132110 ATGAAAATCTG 132120 | || ||||| Sbjct 62 ACAAAGATCTG 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476547071963040