Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 226 3e-54
seq7528 93.3 4e-14
seq236 89.7 5e-13
seq3754 86.0 6e-12
seq8082 84.2 2e-11
seq5348 84.2 2e-11
>seq5216
Length=2424
Score = 226 bits (250), Expect = 3e-54
Identities = 638/969 (66%), Gaps = 27/969 (3%)
Strand=Plus/Minus
Query 147462 GATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGC 147521
||| || || || ||||||||||| ||| || | | | ||||| | ||| ||||
Sbjct 1413 GATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGT 1354
Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581
||||||||| | | || |||| || | || | ||| || || || ||||| ||
Sbjct 1353 GCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGC 1294
Query 147582 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA-CTTGCGTTTCAACGATAA---ACC 147637
||| |||||||||||| |||| |||||||||||| || || ||| ||| |||
Sbjct 1293 GTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAG-GATCTGGTACC 1235
Query 147638 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGT 147697
|||||||| || |||| || || ||||||||| || ||||| |||||||
Sbjct 1234 AG---AGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGT 1178
Query 147698 ACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACA 147757
| | | || ||||||||||||||| ||| | ||||| || | ||| || |
Sbjct 1177 AGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCGGGCAGA 1118
Query 147758 TCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCG 147817
|| | ||| || || || | || || ||||||| || || || ||||| || |
Sbjct 1117 AGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGG 1058
Query 147818 CGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTT---GCGTTTCA-AATTA 147873
|||| | || ||||| || | ||||| ||| ||| ||| | ||| |
Sbjct 1057 CGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGA 998
Query 147874 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC 147933
|| | | || |||||||||||| || || | ||| | ||| | | || || |||
Sbjct 997 AGTCCTC----GACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGC 942
Query 147934 TTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCC 147990
|| ||||| |||||| || | ||| | ||| ||| || ||||| | ||| || |
Sbjct 941 TTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACA 882
Query 147991 AGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGC 148050
| |||| ||| |||||||||| || | |||||| ||| || | | |||
Sbjct 881 ATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTTGTGG 822
Query 148051 ACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTG 148110
| ||| ||||| ||||||||| ||||||| || ||| ||||| | | ||| |
Sbjct 821 ATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTCTGG 762
Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGC---CAAGCAAAAAACACGAACACATTTGC 148167
||||||| ||||| ||||| || | | | || || | | ||| |||||||
Sbjct 761 AAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGA---CATTTGC 705
Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227
|| | || || || ||| ||||| || | |||||||| || || || || |
Sbjct 704 GGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGAC 645
Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287
|||||| || ||||| || ||| |||||||||| ||| ||||| | | ||||
Sbjct 644 ATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACG 585
Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCC 148346
||||||||||||||||| || || ||||| | |||| || | |||||| || ||
Sbjct 584 CGCATGAGCATGTGCTGCGGGCGCTCGGCGATCTTG-CCGTCAACCTTGAGCAGGTACGA 526
Query 148347 ATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406
||||| || ||| | || ||| | | ||| || || || | ||||| || |||
Sbjct 525 GCGCTCGAGCGTCTTGAAGCCGAAGAAGTCGTACTCGAAGTCGCGGTCGTACTTGACGGC 466
Query 148407 CGCATCTAG 148415
||| || ||
Sbjct 465 CGCGTCGAG 457
>seq7528
Length=2088
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | |||| || | | | ||||| || || |||||||||||||| | ||
Sbjct 221 CGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTG 162
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| ||||||||||| || |||| | || |||||||||||||| || || |||||
Sbjct 161 CGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCC 102
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || |||| | || | || || | ||||| || |||| |
Sbjct 101 TCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGC 42
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || || || || || | || ||||||||
Sbjct 41 GTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || ||||||||||| || | || || ||||||||||| || || |
Sbjct 878 GACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCG 819
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| |||||||||||||| || || ||||| || || || || || || ||||
Sbjct 818 AAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 759
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || || | || | || || || || || || ||
Sbjct 758 TTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTG 699
Query 132110 ATGAAAATCTGCATG 132124
| ||| |||||||||
Sbjct 698 ACGAAGATCTGCATG 684
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||||| | || || || |||||||| || || |
Sbjct 1106 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 1047
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| |||||||||||||| || || ||||| || || || || || || ||||
Sbjct 1046 AAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 987
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || || | || | || || || || || || ||
Sbjct 986 TTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTG 927
Query 132110 ATGAAAATCTGCATG 132124
| ||| |||||||||
Sbjct 926 ACGAAGATCTGCATG 912
>seq236
Length=1170
Score = 89.7 bits (98), Expect = 5e-13
Identities = 163/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 46750 TCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGC 46808
|||| |||| |||| ||||| ||| ||||||| |||||||||||| | || || ||
Sbjct 590 TCGA-CACGCTGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGC 648
Query 46809 GAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttt 46868
| | | ||| | ||||||||| | || | || ||| ||||| ||| | || ||
Sbjct 649 AACATCTGCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTC 708
Query 46869 tCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACG 46928
|||||| ||| |||||| || | | || | ||| | |||||||| || ||
Sbjct 709 TCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACC 768
Query 46929 TTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984
||| || ||| ||||| |||||||| || | ||||| |||||||| || ||
Sbjct 769 TTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCT 824
>seq3754
Length=471
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | |||| || | | | ||||| || || ||||| |||||||||| ||
Sbjct 222 ACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGT 163
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| || |||||||| || |||| |||| || ||||||||||| || || |||||
Sbjct 162 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCC 103
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || || |||| | || | || || | ||||| || ||||
Sbjct 102 CTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAG 43
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || || || || || | ||| ||||||||
Sbjct 42 GGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1
>seq8082
Length=462
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||||| | || || || |||||||| || ||||
Sbjct 194 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 135
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || ||||||||||| || || ||||| || || || ||| || ||||
Sbjct 134 AAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACG 75
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || |||| || | || ||||| || || || ||
Sbjct 74 TTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTG 15
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 14 ACGAAGATCTGCAT 1
>seq5348
Length=435
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||| ||||| | || || || |||||||| || ||||
Sbjct 242 GACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 183
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || ||||||||||| || || ||||| || || || ||| || || ||||
Sbjct 182 AAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 123
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || |||| || | || ||||| || || || |||
Sbjct 122 TTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTACCCGTGAGGGTCTTT 63
Query 132110 ATGAAAATCTG 132120
| || |||||
Sbjct 62 ACAAAGATCTG 52
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476547071963040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |