Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq7460 262 5e-65 >seq7460 Length=1425 Score = 262 bits (290), Expect = 5e-65 Identities = 441/633 (70%), Gaps = 4/633 (1%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 |||||||||||||||||||| || || | | | ||||| || |||||||| ||| Sbjct 1325 ATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCTCGACG 1266 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 ||||| ||| | ||| ||| || | | ||| | || ||||| | |||||| Sbjct 1265 TGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTCCCCGGCGCGCAGGCCG 1206 Query 146992 GT-CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 || ||| | | | | || | ||||| |||| ||| ||| ||||||||||| || || Sbjct 1205 GTGCACTTTG-CGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGGCACGCC 1147 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTA 147110 |||||| ||||| ||||||| |||||||| |||||||||||||| || | || |||||| Sbjct 1146 CAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGACACGTA 1087 Query 147111 AAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCA 147170 |||||| | |||||||| |||||||| |||||| | | | |||| |||||||| Sbjct 1086 AAACTGCGCGAACATGTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGCCGGGTTCCA 1027 Query 147171 GGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCT 147230 |||||||| | || || | | | |||||| | || || | | || | | Sbjct 1026 GGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCACAAGCTGCGC 967 Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAA 147289 |||||||| ||||||||||| |||| | ||| ||| | | |||| ||| |||| Sbjct 966 GAGCTGGTCTACGCCCTGGCCGGCGTA-CTCGTCGTGCATGGTCTTGTACTCGGCGCCAA 908 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 |||| | ||||||||||||||| || || || || ||||| || | | || || || Sbjct 907 AGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGATCCGTGAGGC 848 Query 147350 CCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGG 147409 | | | || || || ||||||||| | ||||||| ||| | |||| | Sbjct 847 CGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATGTCCTTTTCCT 788 Query 147410 AGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCC 147469 ||| ||| | | ||| |||| ||||||||||||||| ||||| || || | Sbjct 787 GCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGGCGACGCCGC 728 Query 147470 TCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 ||||||||| | |||||| |||||||| |||| Sbjct 727 GCCAAAAGACGCGCTTGGTCGTCAGCAGCGGGA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583409491689600