Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq7460 84.2 3e-11 >seq7460 Length=1425 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 176375 CGGTTCGCGTTCAAGCTGTTCCTTCACCTGATCGAAGTGATTGTTATAGATGTGGGTATC 176434 ||| ||||| | |||||||||||| | | |||| ||| || || || |||||| || Sbjct 1302 CGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCTCGACGTGGTTTTTGTAAATGTGGCAGTC 1243 Query 176435 ACCAAGGTTGCCGATCAGTTCCCCGACTTCCAAGCCGCATTCCAGCGCGATCAGATGTGT 176494 || | | | ||| | |||||| | || |||| | |||| |||||| || Sbjct 1242 GCCGATGACGTGGATGAACTCCCCGGCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGT 1183 Query 176495 CAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAAGACGTCCACGGACCGCTG 176554 || || ||||| ||||| |||||||| || | |||| | || ||| | |||||||| Sbjct 1182 GAGAAGCGCGTACGAGGCAATGTTGAAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTG 1123 Query 176555 ATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATAGAACTG-GAAACCGTAGTGACACG 176613 | | |||| || || | || ||| || || ||||| | | | | ||| || | Sbjct 1122 GTACATTTGGCACGAGAGCTCGCCCTTGGACACGTAAAACTGCGCGAACAT-GTGGCAGG 1064 Query 176614 GCGGCAAAGCCATTAGATCGACCGCCCCGACATTCCAAGCCGAGA 176658 |||||| ||||| || | || |||| | ||||| ||||||| Sbjct 1063 GCGGCAGGGCCATGAGGTGGAACGCCGCCGGGTTCCAGGCCGAGA 1019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622831386759840