Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_027296.1
Length=53721
Score E
Sequences producing significant alignments: (Bits) Value
seq6165 80.6 9e-11
>seq6165
Length=720
Score = 80.6 bits (88), Expect = 9e-11
Identities = 187/271 (69%), Gaps = 17/271 (6%)
Strand=Plus/Minus
Query 36344 CCATGCACATATGC-CGGCATTTGAGCAAGACGCCGACGCCGCGCGGTTTGAGCTCGGAT 36402
|||||||||| ||| |||| | || | |||| ||||||| | || | ||| |||
Sbjct 604 CCATGCACATGTGCTCGGCCTC-GATGATGACGGCGACGCCCTGGGGGTCGAG----GAT 550
Query 36403 -TCGAAAAGCGCGTTGGCGATCTGCACCGTCAATCGTTCCTGAACCTGGAGGCGTCGAGC 36461
|| | | || | |||||||||| || | || ||||| ||||||||||| || ||
Sbjct 549 CTCCATGATGGCCTCGGCGATCTGCGTTGTGAGGCGCTCCTGGACCTGGAGGCGACGCGC 490
Query 36462 GAACACGTTAGCCACTCGGCTGAGTTTCGAAAGCCCAAGAACGCGCCCATCCGGAATGTA 36521
||||| | || || ||| || ||||| || || | ||| | | || |||||
Sbjct 489 GAACATCTCGCTGACGCGCGCGAGCTTGGAAAGGCCGAGGATGCGGCGCTTGGGGATGTA 430
Query 36522 AGCAATAGTCGC-CGTGCCGAAGATGTCGGCA--AGGTGATGCTCGCATTTCGAATAGA- 36577
| |||| || || | |||| || | |||| ||||| |||||||| | ||| |||
Sbjct 429 ACCAAT-GTGGCACTTGCCCTTGAAG--GGCACGAGGTGGTGCTCGCACATGGAAAAGAG 373
Query 36578 -TCGGAATGTCCTTGACCAAGACCATCTCGT 36607
||| ||||| ||||| | |||||||||||
Sbjct 372 GTCG--ATGTCTTTGACGATGACCATCTCGT 344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 171763641935144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |