Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_027296.1 Length=53721 Score E Sequences producing significant alignments: (Bits) Value seq6165 80.6 9e-11 >seq6165 Length=720 Score = 80.6 bits (88), Expect = 9e-11 Identities = 187/271 (69%), Gaps = 17/271 (6%) Strand=Plus/Minus Query 36344 CCATGCACATATGC-CGGCATTTGAGCAAGACGCCGACGCCGCGCGGTTTGAGCTCGGAT 36402 |||||||||| ||| |||| | || | |||| ||||||| | || | ||| ||| Sbjct 604 CCATGCACATGTGCTCGGCCTC-GATGATGACGGCGACGCCCTGGGGGTCGAG----GAT 550 Query 36403 -TCGAAAAGCGCGTTGGCGATCTGCACCGTCAATCGTTCCTGAACCTGGAGGCGTCGAGC 36461 || | | || | |||||||||| || | || ||||| ||||||||||| || || Sbjct 549 CTCCATGATGGCCTCGGCGATCTGCGTTGTGAGGCGCTCCTGGACCTGGAGGCGACGCGC 490 Query 36462 GAACACGTTAGCCACTCGGCTGAGTTTCGAAAGCCCAAGAACGCGCCCATCCGGAATGTA 36521 ||||| | || || ||| || ||||| || || | ||| | | || ||||| Sbjct 489 GAACATCTCGCTGACGCGCGCGAGCTTGGAAAGGCCGAGGATGCGGCGCTTGGGGATGTA 430 Query 36522 AGCAATAGTCGC-CGTGCCGAAGATGTCGGCA--AGGTGATGCTCGCATTTCGAATAGA- 36577 | |||| || || | |||| || | |||| ||||| |||||||| | ||| ||| Sbjct 429 ACCAAT-GTGGCACTTGCCCTTGAAG--GGCACGAGGTGGTGCTCGCACATGGAAAAGAG 373 Query 36578 -TCGGAATGTCCTTGACCAAGACCATCTCGT 36607 ||| ||||| ||||| | ||||||||||| Sbjct 372 GTCG--ATGTCTTTGACGATGACCATCTCGT 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171763641935144