Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq5216 111 5e-19 seq236 89.7 2e-12 >seq5216 Length=2424 Score = 111 bits (122), Expect = 5e-19 Identities = 318/479 (66%), Gaps = 20/479 (4%) Strand=Plus/Plus Query 254755 CACGCATGCGACCCCGACTCTCTTCACGGCCGGTCTGAAGCGCC---AAACCTTGGCCAG 254811 |||||| || || ||||| ||||||| ||||| |||| ||| || | || Sbjct 660 CACGCACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAAA---TGTCGAG 716 Query 254812 CTGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCG 254871 ||||| ||| || ||| | || ||| ||| | ||||||||| | ||||| || | Sbjct 717 CTGCTTCCTCGTGCACATGAAGGACGACTCGATCGAGGGCATCTTCCAGACGCT--CGAG 774 Query 254872 A--TGCGCATTCGTGAGTCAATCGAGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGC 254929 | ||||| | | | | ||||||| | || |||||||| |||| | ||| Sbjct 775 ACCTGCGCGCGCATCTCCAAGTACGCCGGCGGCATCGGCGTCAACATCCACAACATCCGC 834 Query 254930 GCCAGCGGCA-CACCGATTCGCTCG-ACGAACGGACGGAGCGGCGGCATTATACCAATGA 254987 ||| |||| | || |||| | || ||||| | | ||||||| | || ||| Sbjct 835 GCCTCGGGCAGCTACG--TCGCCGGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGC 892 Query 254988 TCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAG 255047 | || || |||||| || || |||||||| || || || |||||||| ||| || Sbjct 893 TTCGCGTCTTCAACGACACCGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCT 952 Query 255048 CGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTGCTGTCCG 255107 | ||| |||| ||||| ||||| |||||||||||| | || || || | || |||| Sbjct 953 CCTTCGCCATGTACCTCGAGCCTTGGCACGCCGACGTCGA--GGACTTCATTGAGCTCCG 1010 Query 255108 ACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGGTGCT 255164 ||||| ||||| |||||| | |||||||||| ||| | ||| ||||| | Sbjct 1011 -CAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCC 1069 Query 255165 GCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCCAAC 255223 ||| || ||||||| || || || || ||||||| |||| | || || ||| Sbjct 1070 CCGACCTTTTTATGCAGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAAC 1128 >seq236 Length=1170 Score = 89.7 bits (98), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 443689 AAAATCT-CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTT 443747 || |||| || ||| | |||||| || |||| |||||| | ||||| || | || || Sbjct 649 AACATCTGCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTC 708 Query 443748 AGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGAC 443807 ||| |||| || ||||||||||| | || ||||| || || |||| ||||| || Sbjct 709 TCGGGCTCCTTTTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCAC 767 Query 443808 CTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| || || ||||||| || |||||||| |||| |||||| || || || || Sbjct 768 CTTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCT 827 Query 443868 CTACACCAAACACATC 443883 || | ||| | |||| Sbjct 828 CTTCCGCAAGCTCATC 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588116946625980