Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 111 5e-19
seq236 89.7 2e-12
>seq5216
Length=2424
Score = 111 bits (122), Expect = 5e-19
Identities = 318/479 (66%), Gaps = 20/479 (4%)
Strand=Plus/Plus
Query 254755 CACGCATGCGACCCCGACTCTCTTCACGGCCGGTCTGAAGCGCC---AAACCTTGGCCAG 254811
|||||| || || ||||| ||||||| ||||| |||| ||| || | ||
Sbjct 660 CACGCACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAAA---TGTCGAG 716
Query 254812 CTGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCG 254871
||||| ||| || ||| | || ||| ||| | ||||||||| | ||||| || |
Sbjct 717 CTGCTTCCTCGTGCACATGAAGGACGACTCGATCGAGGGCATCTTCCAGACGCT--CGAG 774
Query 254872 A--TGCGCATTCGTGAGTCAATCGAGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGC 254929
| ||||| | | | | ||||||| | || |||||||| |||| | |||
Sbjct 775 ACCTGCGCGCGCATCTCCAAGTACGCCGGCGGCATCGGCGTCAACATCCACAACATCCGC 834
Query 254930 GCCAGCGGCA-CACCGATTCGCTCG-ACGAACGGACGGAGCGGCGGCATTATACCAATGA 254987
||| |||| | || |||| | || ||||| | | ||||||| | || |||
Sbjct 835 GCCTCGGGCAGCTACG--TCGCCGGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGC 892
Query 254988 TCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAG 255047
| || || |||||| || || |||||||| || || || |||||||| ||| ||
Sbjct 893 TTCGCGTCTTCAACGACACCGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCT 952
Query 255048 CGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTGCTGTCCG 255107
| ||| |||| ||||| ||||| |||||||||||| | || || || | || ||||
Sbjct 953 CCTTCGCCATGTACCTCGAGCCTTGGCACGCCGACGTCGA--GGACTTCATTGAGCTCCG 1010
Query 255108 ACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGGTGCT 255164
||||| ||||| |||||| | |||||||||| ||| | ||| ||||| |
Sbjct 1011 -CAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCC 1069
Query 255165 GCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCCAAC 255223
||| || ||||||| || || || || ||||||| |||| | || || |||
Sbjct 1070 CCGACCTTTTTATGCAGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAAC 1128
>seq236
Length=1170
Score = 89.7 bits (98), Expect = 2e-12
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 443689 AAAATCT-CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTT 443747
|| |||| || ||| | |||||| || |||| |||||| | ||||| || | || ||
Sbjct 649 AACATCTGCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTC 708
Query 443748 AGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGAC 443807
||| |||| || ||||||||||| | || ||||| || || |||| ||||| ||
Sbjct 709 TCGGGCTCCTTTTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCAC 767
Query 443808 CTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867
||| || || ||||||| || |||||||| |||| |||||| || || || ||
Sbjct 768 CTTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCT 827
Query 443868 CTACACCAAACACATC 443883
|| | ||| | ||||
Sbjct 828 CTTCCGCAAGCTCATC 843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588116946625980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |