Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 158 2e-33
seq302 102 1e-16
seq236 93.3 5e-14
>seq5216
Length=2424
Score = 158 bits (174), Expect = 2e-33
Identities = 632/982 (64%), Gaps = 21/982 (2%)
Strand=Plus/Minus
Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174
||| ||||| || || || | ||| ||||| ||||| || || ||||| || | ||| ||
Sbjct 1536 CTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGT 1477
Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TTGACATACTTTGG 111231
|| || | || | | || | |||| ||| ||| ||||| |||| |
Sbjct 1476 GACATCGTAGAGGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCG 1420
Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291
||| ||| || || | ||||| || || ||| || | | |||||| | ||
Sbjct 1419 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 1360
Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351
|| || || | ||| || ||| || | || | ||||| ||||| ||| |||
Sbjct 1359 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 1300
Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411
||| || |||||| |||||||| | ||| || ||||| |||| | | || ||
Sbjct 1299 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTG 1240
Query 111412 CTTCCAAACATCGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTACTT 111468
| ||| | || ||| | | ||| ||| ||| || |||||| ||||||
Sbjct 1239 GTACCAGAGGTCCTGGGCGCGCA---TGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCG 1183
Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528
|||||| | | ||||| || || | || ||||| || |||| || ||
Sbjct 1182 CTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCGG 1123
Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588
||||| || | ||| | |||| || |||| ||| |||||||| || | |||
Sbjct 1122 GCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCA 1063
Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648
|||| | ||||| || | || |||| || | || ||||| || | |||
Sbjct 1062 GAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTC 1003
Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708
|| ||| ||| || || |||||||| ||||| || || | |||| || ||||| ||
Sbjct 1002 AATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCG 943
Query 111709 AC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765
||| | | || | || ||||| || ||| |||| || ||||||||||| || |
Sbjct 942 CTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCAC 883
Query 111766 AATACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCA 111823
||| || | || || || || || || ||| || | | ||| | | |
Sbjct 882 AATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTG 825
Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883
||||||| | || || || || || |||| ||||| |||| || | || ||
Sbjct 824 TGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTC 765
Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943
|||| || | ||| ||||| ||||| || | |||||||| || ||||| |||
Sbjct 764 TGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGC 705
Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGA 112002
|| | || || || || ||||||||||| || || ||||| |||| | || | || ||
Sbjct 704 GGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCGA 646
Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062
|||| ||||||| ||||| | | | ||| ||||| | | ||||||||||| | |||
Sbjct 645 CATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGAC 586
Query 112063 CCGCATGAACATGTACTGTGGG 112084
||||||| ||||| ||| |||
Sbjct 585 GCGCATGAGCATGTGCTGCGGG 564
>seq302
Length=2502
Score = 102 bits (112), Expect = 1e-16
Identities = 285/428 (67%), Gaps = 17/428 (4%)
Strand=Plus/Minus
Query 11436 CCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCA 11495
|||| | ||| |||| ||||| || || ||||| || | |||| || || || || |
Sbjct 1540 CCACGTTGATGGTGCGGTCAAAGCGGCCGGGGCGCAGAATGGCGGGGTCGAGAATGTCGA 1481
Query 11496 CGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCA---AAGCCATCCATCT 11552
|||| || ||| | |||| |||||| | ||| ||| ||| ||||| ||||| |
Sbjct 1480 CGCGGTTGGTGCCAGCAAGAACCACGACGCC---CTCCTTGGAGGTGAAGCCGTCCATTT 1424
Query 11553 CGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC----ATACCACCA 11608
| ||| | || || | || | || | ||| || || || | | | || ||
Sbjct 1423 CAACGAGCAGCTGGTTCAGGGTGTTCTCGCGCTCGTCGTT-GCCGCCGCTGAAGCCGCCC 1365
Query 11609 GCACTGCGTTGCTTGC-CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATT 11667
|| ||| || || |||| || || ||||||||||||||||| || || || ||
Sbjct 1364 TTACCGCGC-GCGCGCGCCACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTT 1306
Query 11668 TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTC 11727
| |||||| ||||||||||||| || | || || || || || ||||||||
Sbjct 1305 CTTGCGGGCCTGGCCAAAGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTC 1246
Query 11728 CACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCT 11785
| |||| | || || | | | || || ||| || || | | || |||||| | ||
Sbjct 1245 AATAAAG-TCGCTGCCG-GAAATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCC 1188
Query 11786 CGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATC 11845
||| || |||||||| || ||||| || || ||||| || ||||| |||||||
Sbjct 1187 TTGGCCAGCAGGGTCTTGCCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATC 1128
Query 11846 TTGGCACC 11853
||||| ||
Sbjct 1127 TTGGCGCC 1120
>seq236
Length=1170
Score = 93.3 bits (102), Expect = 5e-14
Identities = 125/173 (72%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| | ||||| || ||| || | ||||| |||||| |||||
Sbjct 818 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCC 759
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
|||||||| || |||||||| | ||| | || ||||| || || || |||||||||||
Sbjct 758 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATG 699
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGC 122831
||||| || |||||| | | ||||| ||||| |||| || ||| ||||
Sbjct 698 CCCTCGACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGC-AGATGTTGC 647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627947498294400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |