Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5216 158 2e-33 seq302 102 1e-16 seq236 93.3 5e-14 >seq5216 Length=2424 Score = 158 bits (174), Expect = 2e-33 Identities = 632/982 (64%), Gaps = 21/982 (2%) Strand=Plus/Minus Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 ||| ||||| || || || | ||| ||||| ||||| || || ||||| || | ||| || Sbjct 1536 CTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGT 1477 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TTGACATACTTTGG 111231 || || | || | | || | |||| ||| ||| ||||| |||| | Sbjct 1476 GACATCGTAGAGGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCG 1420 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 ||| ||| || || | ||||| || || ||| || | | |||||| | || Sbjct 1419 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 1360 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || | ||| || ||| || | || | ||||| ||||| ||| ||| Sbjct 1359 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 1300 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 ||| || |||||| |||||||| | ||| || ||||| |||| | | || || Sbjct 1299 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTG 1240 Query 111412 CTTCCAAACATCGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTACTT 111468 | ||| | || ||| | | ||| ||| ||| || |||||| |||||| Sbjct 1239 GTACCAGAGGTCCTGGGCGCGCA---TGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCG 1183 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 |||||| | | ||||| || || | || ||||| || |||| || || Sbjct 1182 CTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCGG 1123 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 ||||| || | ||| | |||| || |||| ||| |||||||| || | ||| Sbjct 1122 GCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCA 1063 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 |||| | ||||| || | || |||| || | || ||||| || | ||| Sbjct 1062 GAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTC 1003 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 || ||| ||| || || |||||||| ||||| || || | |||| || ||||| || Sbjct 1002 AATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCG 943 Query 111709 AC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 ||| | | || | || ||||| || ||| |||| || ||||||||||| || | Sbjct 942 CTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCAC 883 Query 111766 AATACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCA 111823 ||| || | || || || || || || ||| || | | ||| | | | Sbjct 882 AATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTG 825 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 ||||||| | || || || || || |||| ||||| |||| || | || || Sbjct 824 TGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTC 765 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 |||| || | ||| ||||| ||||| || | |||||||| || ||||| ||| Sbjct 764 TGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGC 705 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGA 112002 || | || || || || ||||||||||| || || ||||| |||| | || | || || Sbjct 704 GGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCGA 646 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 |||| ||||||| ||||| | | | ||| ||||| | | ||||||||||| | ||| Sbjct 645 CATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGAC 586 Query 112063 CCGCATGAACATGTACTGTGGG 112084 ||||||| ||||| ||| ||| Sbjct 585 GCGCATGAGCATGTGCTGCGGG 564 >seq302 Length=2502 Score = 102 bits (112), Expect = 1e-16 Identities = 285/428 (67%), Gaps = 17/428 (4%) Strand=Plus/Minus Query 11436 CCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCA 11495 |||| | ||| |||| ||||| || || ||||| || | |||| || || || || | Sbjct 1540 CCACGTTGATGGTGCGGTCAAAGCGGCCGGGGCGCAGAATGGCGGGGTCGAGAATGTCGA 1481 Query 11496 CGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCA---AAGCCATCCATCT 11552 |||| || ||| | |||| |||||| | ||| ||| ||| ||||| ||||| | Sbjct 1480 CGCGGTTGGTGCCAGCAAGAACCACGACGCC---CTCCTTGGAGGTGAAGCCGTCCATTT 1424 Query 11553 CGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC----ATACCACCA 11608 | ||| | || || | || | || | ||| || || || | | | || || Sbjct 1423 CAACGAGCAGCTGGTTCAGGGTGTTCTCGCGCTCGTCGTT-GCCGCCGCTGAAGCCGCCC 1365 Query 11609 GCACTGCGTTGCTTGC-CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATT 11667 || ||| || || |||| || || ||||||||||||||||| || || || || Sbjct 1364 TTACCGCGC-GCGCGCGCCACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTT 1306 Query 11668 TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTC 11727 | |||||| ||||||||||||| || | || || || || || |||||||| Sbjct 1305 CTTGCGGGCCTGGCCAAAGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTC 1246 Query 11728 CACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCT 11785 | |||| | || || | | | || || ||| || || | | || |||||| | || Sbjct 1245 AATAAAG-TCGCTGCCG-GAAATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCC 1188 Query 11786 CGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATC 11845 ||| || |||||||| || ||||| || || ||||| || ||||| ||||||| Sbjct 1187 TTGGCCAGCAGGGTCTTGCCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATC 1128 Query 11846 TTGGCACC 11853 ||||| || Sbjct 1127 TTGGCGCC 1120 >seq236 Length=1170 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||||| || ||| || | ||||| |||||| ||||| Sbjct 818 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCC 759 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || ||||| || || || ||||||||||| Sbjct 758 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATG 699 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGC 122831 ||||| || |||||| | | ||||| ||||| |||| || ||| |||| Sbjct 698 CCCTCGACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGC-AGATGTTGC 647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627947498294400