Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5216 235 7e-57 seq236 118 1e-21 seq6412 109 7e-19 >seq5216 Length=2424 Score = 235 bits (260), Expect = 7e-57 Identities = 650/978 (66%), Gaps = 29/978 (3%) Strand=Plus/Minus Query 118589 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 118648 ||| ||||| || || || | ||||| || | || || || |||||||| ||||| || Sbjct 1536 CTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGT 1477 Query 118649 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGG 118705 || || | || | | | || | ||| ||| ||| ||||| |||| | Sbjct 1476 GACATCGTAGAGGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCG 1420 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 ||| ||| || || || || || || | | ||| || | | |||||| || || Sbjct 1419 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 1360 Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825 || ||||||| ||| || ||| ||| |||| | |||||| || || ||||| ||| Sbjct 1359 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 1300 Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 || || |||||| | |||||| | ||| || ||||| | ||| | | || || Sbjct 1299 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTG 1240 Query 118886 CTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945 | ||||| || || ||| || | | | || ||||| | |||||| Sbjct 1239 GTACCAGAGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTC 1180 Query 118946 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG-CCCTGGTGCCTTATCTGGGC 119004 |||||| | | ||||| || || | | || ||||| |||| | |||| | |||| Sbjct 1179 GTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTG-GCCTCGTTCGGGC 1121 Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064 ||||||| | ||| | |||| || |||| ||| || ||||| |||| ||||| Sbjct 1120 AGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGA 1061 Query 119065 GCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 119124 | || ||||||| || || ||| | || || | || || || || | ||| | Sbjct 1060 GGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAA 1001 Query 119125 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA- 119183 |||||| || || |||||||| || || ||||||| |||| || ||||| || Sbjct 1000 TGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCT 941 Query 119184 --CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241 | || |||||| || || | || ||| |||| || || |||||||| || | | Sbjct 940 TGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAA 881 Query 119242 TACCATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTG 119299 | || | || ||||| || || || ||| || | | | ||| | || | ||| Sbjct 880 TGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTGTG 823 Query 119300 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC-TC-CGTGAGACTG 119357 ||||| | || || || || || |||| ||||| ||||||| || || | | ||| Sbjct 822 GATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTCTG 763 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGACATTTG 119416 | |||| || ||||||||||| |||| || ||| | ||||||||||||||||||||| Sbjct 762 --GAAGATGCCCTCGATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGACATTTG 706 Query 119417 AGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGG 119475 || | ||| || || ||||||||||| || || || ||||| |||| | || | || | Sbjct 705 CGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCG 647 Query 119476 ACATCTTGTCGTAGGTCTCCAAGACGGCGGGA---ATGTCTTCCCCGTGAATACCGATCG 119532 ||||| ||||||||||||| || |||| || ||||| | | ||| || |||| | Sbjct 646 ACATCATGTCGTAGGTCTC---GATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGG 590 Query 119533 AGACCCGCATAAACATGT 119550 |||| ||||| | ||||| Sbjct 589 AGACGCGCATGAGCATGT 572 >seq236 Length=1170 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | |||||||| ||| ||| | ||||| |||||| ||||| Sbjct 818 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCC 759 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | |||||| || || ||||| ||||| ||||||||||| Sbjct 758 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATG 699 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 ||||| || ||| || | | ||| ||||| ||||||| || | || || | Sbjct 698 CCCTCGACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGCAGATGTTGCCGTCCATG 639 Query 130196 CACTTCATCGCCCACTGCGCCTTTT 130220 | ||| |||||||||||||||| Sbjct 638 TAGCGCATGGCCCACTGCGCCTTTT 614 >seq6412 Length=4986 Score = 109 bits (120), Expect = 7e-19 Identities = 254/379 (67%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 179730 CAACTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTG 179789 || |||||| ||||| |||||||||| |||||| | || | || || ||||||||||| Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984 Query 179790 TGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG---CTCGGA 179846 || ||||||| ||| ||| ||||| ||||| || | || ||||| || || || Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGG- 1925 Query 179847 AACATCTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTC 179906 || ||| ||| || | || || |||| ||||||| ||| || | || || Sbjct 1924 --TGTCGGCGTAAGTCTTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 1867 Query 179907 TTGGTTTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAG 179966 | ||| ||| || | || || || ||||| || ||| ||||| | Sbjct 1866 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 1807 Query 179967 AGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTT 180026 || || || ||||||| || || || || || ||| || | ||||| ||||| Sbjct 1806 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAGCCCGCTGATGGCGAGCGTCTT 1747 Query 180027 CGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCTGCCT 180085 ||||| |||||||| || | |||||| || || || | || | ||| | | || || | Sbjct 1746 TGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGT-TGCGGCCGCCGGCGT 1688 Query 180086 TGTTCGCGTCGTCCAACTT 180104 |||| |||||||| | ||| Sbjct 1687 TGTTGGCGTCGTCGAGCTT 1669 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 179110 AGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCG 179169 || || ||||| ||||| || |||| || | |||| |||| ||||| || Sbjct 2675 AGCAGGTTGATGTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGAC 2616 Query 179170 AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCC 179229 || ||||| |||||||| ||||| ||||| | |||| || || | | | |||||| Sbjct 2615 AGCGAGACCTCACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCG 2556 Query 179230 ACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAA 179289 ||||| || || |||||| || | |||||| ||| | | |||||| | || || Sbjct 2555 ACCTTGATGTCCGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAG 2496 Query 179290 GGCTTGAGGCCGTCGGCCATG 179310 ||||||||||||||| ||||| Sbjct 2495 GGCTTGAGGCCGTCGACCATG 2475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618351989543840