Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 235 7e-57
seq236 118 1e-21
seq6412 109 7e-19
>seq5216
Length=2424
Score = 235 bits (260), Expect = 7e-57
Identities = 650/978 (66%), Gaps = 29/978 (3%)
Strand=Plus/Minus
Query 118589 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 118648
||| ||||| || || || | ||||| || | || || || |||||||| ||||| ||
Sbjct 1536 CTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGT 1477
Query 118649 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGG 118705
|| || | || | | | || | ||| ||| ||| ||||| |||| |
Sbjct 1476 GACATCGTAGAGGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCG 1420
Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765
||| ||| || || || || || || | | ||| || | | |||||| || ||
Sbjct 1419 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 1360
Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825
|| ||||||| ||| || ||| ||| |||| | |||||| || || ||||| |||
Sbjct 1359 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 1300
Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885
|| || |||||| | |||||| | ||| || ||||| | ||| | | || ||
Sbjct 1299 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTG 1240
Query 118886 CTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945
| ||||| || || ||| || | | | || ||||| | ||||||
Sbjct 1239 GTACCAGAGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTC 1180
Query 118946 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG-CCCTGGTGCCTTATCTGGGC 119004
|||||| | | ||||| || || | | || ||||| |||| | |||| | ||||
Sbjct 1179 GTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTG-GCCTCGTTCGGGC 1121
Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064
||||||| | ||| | |||| || |||| ||| || ||||| |||| |||||
Sbjct 1120 AGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGA 1061
Query 119065 GCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 119124
| || ||||||| || || ||| | || || | || || || || | ||| |
Sbjct 1060 GGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAA 1001
Query 119125 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA- 119183
|||||| || || |||||||| || || ||||||| |||| || ||||| ||
Sbjct 1000 TGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCT 941
Query 119184 --CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241
| || |||||| || || | || ||| |||| || || |||||||| || | |
Sbjct 940 TGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAA 881
Query 119242 TACCATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTG 119299
| || | || ||||| || || || ||| || | | | ||| | || | |||
Sbjct 880 TGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTGTG 823
Query 119300 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC-TC-CGTGAGACTG 119357
||||| | || || || || || |||| ||||| ||||||| || || | | |||
Sbjct 822 GATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTCTG 763
Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGACATTTG 119416
| |||| || ||||||||||| |||| || ||| | |||||||||||||||||||||
Sbjct 762 --GAAGATGCCCTCGATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGACATTTG 706
Query 119417 AGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGG 119475
|| | ||| || || ||||||||||| || || || ||||| |||| | || | || |
Sbjct 705 CGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCG 647
Query 119476 ACATCTTGTCGTAGGTCTCCAAGACGGCGGGA---ATGTCTTCCCCGTGAATACCGATCG 119532
||||| ||||||||||||| || |||| || ||||| | | ||| || |||| |
Sbjct 646 ACATCATGTCGTAGGTCTC---GATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGG 590
Query 119533 AGACCCGCATAAACATGT 119550
|||| ||||| | |||||
Sbjct 589 AGACGCGCATGAGCATGT 572
>seq236
Length=1170
Score = 118 bits (130), Expect = 1e-21
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
||||| || ||| | |||||||| ||| ||| | ||||| |||||| |||||
Sbjct 818 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCC 759
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135
|||||||| || |||||||| | |||||| || || ||||| ||||| |||||||||||
Sbjct 758 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATG 699
Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195
||||| || ||| || | | ||| ||||| ||||||| || | || || |
Sbjct 698 CCCTCGACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGCAGATGTTGCCGTCCATG 639
Query 130196 CACTTCATCGCCCACTGCGCCTTTT 130220
| ||| ||||||||||||||||
Sbjct 638 TAGCGCATGGCCCACTGCGCCTTTT 614
>seq6412
Length=4986
Score = 109 bits (120), Expect = 7e-19
Identities = 254/379 (67%), Gaps = 8/379 (2%)
Strand=Plus/Minus
Query 179730 CAACTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTG 179789
|| |||||| ||||| |||||||||| |||||| | || | || || |||||||||||
Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984
Query 179790 TGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG---CTCGGA 179846
|| ||||||| ||| ||| ||||| ||||| || | || ||||| || || ||
Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGG- 1925
Query 179847 AACATCTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTC 179906
|| ||| ||| || | || || |||| ||||||| ||| || | || ||
Sbjct 1924 --TGTCGGCGTAAGTCTTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 1867
Query 179907 TTGGTTTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAG 179966
| ||| ||| || | || || || ||||| || ||| ||||| |
Sbjct 1866 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 1807
Query 179967 AGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTT 180026
|| || || ||||||| || || || || || ||| || | ||||| |||||
Sbjct 1806 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAGCCCGCTGATGGCGAGCGTCTT 1747
Query 180027 CGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCTGCCT 180085
||||| |||||||| || | |||||| || || || | || | ||| | | || || |
Sbjct 1746 TGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGT-TGCGGCCGCCGGCGT 1688
Query 180086 TGTTCGCGTCGTCCAACTT 180104
|||| |||||||| | |||
Sbjct 1687 TGTTGGCGTCGTCGAGCTT 1669
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 179110 AGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCG 179169
|| || ||||| ||||| || |||| || | |||| |||| ||||| ||
Sbjct 2675 AGCAGGTTGATGTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGAC 2616
Query 179170 AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCC 179229
|| ||||| |||||||| ||||| ||||| | |||| || || | | | ||||||
Sbjct 2615 AGCGAGACCTCACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCG 2556
Query 179230 ACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAA 179289
||||| || || |||||| || | |||||| ||| | | |||||| | || ||
Sbjct 2555 ACCTTGATGTCCGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAG 2496
Query 179290 GGCTTGAGGCCGTCGGCCATG 179310
||||||||||||||| |||||
Sbjct 2495 GGCTTGAGGCCGTCGACCATG 2475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618351989543840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |