Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5216 168 8e-37 seq236 127 2e-24 seq6412 122 1e-22 seq302 102 1e-16 >seq5216 Length=2424 Score = 168 bits (186), Expect = 8e-37 Identities = 406/606 (67%), Gaps = 9/606 (1%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| |||||||||| || |||| || || | | ||||| ||| | Sbjct 564 CCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCACGACATCGATCGCGC 623 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| ||||||| |||||| || | || | |||| ||||| || || ||||||| Sbjct 624 CATCGAGACCTACGACATGATGTCGCAGAAGT-TCTTCACGCACGCCACGCCGACCCTCT 682 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || || || | || |||||||| || |||||||| | || ||||| | Sbjct 683 TCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGCTGCTTCCTCGTGCACATGAAGGACG 742 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| ||| | || |||| || || | || |||| ||||| |||| || | Sbjct 743 ACTCGATCGAGGGCATCTTCCAGACGCTCGAGACCTGCGCGCGCATCTCCAAGTACGCCG 802 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTCG-GGGGAC 104517 | || || || | ||||||| | | | ||| | | || ||| || || Sbjct 803 GCGGCATCGGCGTCAACATCCACAACATCCGCGCC--TCGGGCAGCTACGTCGCCGGCAC 860 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || || || | || ||| | || ||||||||||| || |||| ||| || ||||| Sbjct 861 CAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCCCGCTA 920 Query 104578 TGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 || | || | | ||| || ||||| || |||| | || || ||||| ||||| Sbjct 921 CGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCTTGGCA 980 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| || || ||| ||| ||||| | || ||||| || | ||||||| || Sbjct 981 CGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 1040 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 |||||| ||||||| ||| |||||| | || || || || ||| || | || |||| | Sbjct 1041 CCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAGGCCAA 1100 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 ||| ||| | ||||| || || || |||| || ||||| |||| | || || Sbjct 1101 CAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAGGGCCTCTCGGATGTCTACGGCGA 1160 Query 104815 GGAGTT 104820 ||||| Sbjct 1161 CGAGTT 1166 >seq236 Length=1170 Score = 127 bits (140), Expect = 2e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| ||||| ||| ||| |||||| || ||||| ||||||||||| || |||| Sbjct 659 CCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 718 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 | ||||| || | |||||||||||||| || |||||||| |||||| ||||||||| | Sbjct 719 TTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 778 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || | ||| || |||||||| | ||| || ||||| Sbjct 779 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGC 818 >seq6412 Length=4986 Score = 122 bits (134), Expect = 1e-22 Identities = 308/456 (68%), Gaps = 17/456 (4%) Strand=Plus/Minus Query 169123 CAACTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTG 169182 || |||||| || |||||||||| ||| || | || | | || ||||| ||||| Sbjct 2043 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 1984 Query 169183 GGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGA 169239 || || |||| || ||| |||||||||||||| | || || || || || || Sbjct 1983 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGT 1924 Query 169240 AACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTC 169299 | | | | ||| || ||| | || || |||| ||||||| ||| || | || || Sbjct 1923 GTCGGCGTAA--GTC-TTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 1867 Query 169300 TTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAG 169359 | ||| ||| ||| | ||||| ||||| || || ||| ||||| | Sbjct 1866 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 1807 Query 169360 AGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGC-GACTGCGAGAGTCT 169418 || ||||| ||||||| || || || |||||| ||| ||||| || ||||| |||| Sbjct 1806 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAG-CCCGCTGATGGCGAGCGTCT 1748 Query 169419 TCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGA-TTG-TGCCGTACCCGC 169476 | || |||||||||||||||| |||||| || ||||| | || ||| |||| || || Sbjct 1747 TTGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGTTGCGGCCG--CCGGC 1690 Query 169477 CTTGTTCGCATCATCCA-ATTTGGGAATACCAGTAATTTTGGACTTTCGCGTACCGTCAG 169535 ||||| || || || | ||| || || | || ||||||||| ||| ||| | | Sbjct 1689 GTTGTTGGCGTCGTCGAGCTTTTCGACGTCC-TTGATCTTGGACTTTTTCGTGCCGCCGG 1631 Query 169536 ATTT---TGAGAGTTCCTTCATCTCCTTAAACTTTG 169568 || ||||| || |||||||||| ||||| Sbjct 1630 CCTTGCGCGAGAGCTCGCGCATCTCCTTAGCCTTTG 1595 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 168454 CGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 168513 ||| ||||| || || | | |||| ||| ||||| || | || || || ||||| Sbjct 2724 CGCGTCCTTGCCGCCGAGAATGCGCGAACCGAACTGGCCGCTGGGGAAGAGCAGGTTGAT 2665 Query 168514 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 168573 ||||| || |||| || | ||||| |||| ||||| || || ||||| || Sbjct 2664 GTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGACAGCGAGACCTC 2605 Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633 ||||||||||||||| | ||| | ||| | | | | |||||| || || || || Sbjct 2604 ACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCGACCTTGATGTC 2545 Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693 |||||| || | |||||| || | | |||||||| ||||| |||||||| || Sbjct 2544 CGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAGGGCTTGAGGCC 2485 Query 168694 ATCCGCCATG 168703 || ||||| Sbjct 2484 GTCGACCATG 2475 >seq302 Length=2502 Score = 102 bits (112), Expect = 1e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 9758 |||| || || ||||||||||||||||||||||| || || | ||| || ||| Sbjct 1348 CCACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGCCAA 1289 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 ||||||| || || ||| || ||| || || || |||||||| | ||||| | ||| Sbjct 1288 AGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAGTCGCTGCCGG 1229 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 || || | || |||||| || | | || ||||| | || ||| || || ||||| Sbjct 1228 AA-ATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTCTTG 1170 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || ||||| || || |||||||| || || || ||||||||||| Sbjct 1169 CCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 1120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583182322259360