Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq10376 125 9e-24 >seq10376 Length=738 Score = 125 bits (138), Expect = 9e-24 Identities = 267/391 (68%), Gaps = 16/391 (4%) Strand=Plus/Minus Query 184419 GTGAAGACGGCGTGCTTGGACTTGTCCACCAGACCGGCCTTCTCCTTGGCGTGGTTGCCC 184478 |||| |||| |||||||||| ||| || | |||||||||||| |||||| |||||| Sbjct 611 GTGATGACGAGGTGCTTGGACCGGTCGACGAAGGCGGCCTTCTCCTGGGCGTGCTTGCCC 552 Query 184479 CAGAGCAGGAAGACCAGGCCCTCGGTCTTCTTGGAGAGTTG----CGTG-ATGACCCTGT 184533 ||||||| |||||| |||||| | ||| |||| | ||| || | |||||| || Sbjct 551 CAGAGCATGAAGACGAGGCCC---GACTT-TTGGTCA-TTGAGCACGCGAATGACCTGGT 497 Query 184534 CGCTGAGCACCCTCCAGCCCAGGTTGGAGTGCGACCCGGGCACGCCTCTGATCACGGTGA 184593 | ||| | |||||| | || |||||| | | || ||| ||| |||| Sbjct 496 CAGTGAACTTTTCCCAGCCGAATTTCTTGTGCGAGTGCGCCTCGGACCTGCGCACCGTGA 437 Query 184594 AGGCCGTGTTCAGCAGGAGCACCCCCTGGCGCGCCCAGCTGTCGAGGTGGCCGTGGTTGG 184653 | ||||| ||||||||||| ||||| | ||||| || |||| ||| ||||| Sbjct 436 GCACGGTGTTGAGCAGGAGCACGCCCTGCTGGGCCCACTTGGTGAGGGACCCGGTGTTGG 377 Query 184654 GCGTCCGGAACCCCTCGATGGAGCGTTGCAGCTCCCTGTAGATGTTGCGCAGCGACGGCG 184713 || | || | | || | | | || |||| ||||||||||||| ||||| |||| Sbjct 376 GCTTGGCGATCTTCACG-TCCGCCATAGC--CTCCTTGTAGATGTTGCGGAGCGAGGGCG 320 Query 184714 CCACGGCC---CCGTCACCCGTGGAGAAGGCCAGGCCGTCGGCGCGACGGGGTTGCGGGT 184770 | |||| || || | |||||| || || |||| || | | || ||| Sbjct 319 GGATGGCCACGCCCTCTTGCACGGAGAACGCGAGCCCGTGCGCCTGGCCCGGCCCGTGGT 260 Query 184771 ACGGGTCCTGACCCACGATGACGACCTTGAC 184801 ||||||||||||| | |||||| |||||||| Sbjct 259 ACGGGTCCTGACCGAGGATGACTACCTTGAC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658650566640640