Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7460 174 1e-38 seq8122 107 2e-18 >seq7460 Length=1425 Score = 174 bits (192), Expect = 1e-38 Identities = 426/639 (67%), Gaps = 10/639 (2%) Strand=Plus/Minus Query 29823 TGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 29882 |||| ||| | || |||| ||||| | ||||| | | ||||| ||| || || | Sbjct 1330 TGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCT 1271 Query 29883 CCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT- 29941 | |||| | ||| | ||| ||| || | | ||||| ||||| ||||| | Sbjct 1270 CGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTC-CCCGGCGCGC 1212 Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || |||||| | || | || | |||||| || | ||| ||| ||||| ||||| Sbjct 1211 AGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGGC 1152 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || || ||||| ||||||| |||||| | || ||||||||||| || | | | Sbjct 1151 ACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGAC 1092 Query 30062 ACGTAAAACTGAC---ACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||||||||| ||||| ||||| || || || ||||||||| || | Sbjct 1091 ACGTAAAACTGCGCGAACATG---TGGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGCC 1035 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 ||||||||||| | | ||| ||||| | ||| ||||| | ||||| || ||| Sbjct 1034 GGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCAC- 976 Query 30179 GCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30237 | | || ||||| || || ||| || | ||| || | |||| | ||||||| Sbjct 975 AAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGTACTC 916 Query 30238 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30297 || || || || | ||||||||| ||||| || || || || || ||||| || | | Sbjct 915 GGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGATC 856 Query 30298 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357 | || ||| ||||||| | | | | ||| |||||| ||||||| || | | | Sbjct 855 CGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATGTC 796 Query 30358 CTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCAC 30417 ||| || ||| |||| | | ||| || || |||||| ||||| ||||| | Sbjct 795 CTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGGC 736 Query 30418 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 |||| | ||||||||| | ||||||||| || || || Sbjct 735 GACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGG 697 >seq8122 Length=2121 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 49066 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGGGTCGCACCCAA 49125 |||||||||||||||| || ||||||||||| || ||| | || ||| || Sbjct 1756 TCTCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGT 1697 Query 49126 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 49185 ||| || || | |||||||| ||| || | ||||||| |||| | || || || |||| Sbjct 1696 GGTTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGA 1637 Query 49186 CGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 49245 |||| || || ||| || || || |||| || ||||| | ||||||| ||||| Sbjct 1636 CGTCGATGTGCTTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCCG 1577 Query 49246 GGGGCATCTTCACGGCCAGGTCCGTCTTTACCAG 49279 ||| | || ||||||| ||| ||||| || || Sbjct 1576 CGGGGACCTGGACGGCCACGTCGGTCTTGACGAG 1543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406257097662288