Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq7460 174 1e-38
seq8122 107 2e-18
>seq7460
Length=1425
Score = 174 bits (192), Expect = 1e-38
Identities = 426/639 (67%), Gaps = 10/639 (2%)
Strand=Plus/Minus
Query 29823 TGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 29882
|||| ||| | || |||| ||||| | ||||| | | ||||| ||| || || |
Sbjct 1330 TGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCT 1271
Query 29883 CCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT- 29941
| |||| | ||| | ||| ||| || | | ||||| ||||| ||||| |
Sbjct 1270 CGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTC-CCCGGCGCGC 1212
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| |||||| | || | || | |||||| || | ||| ||| ||||| |||||
Sbjct 1211 AGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGGC 1152
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || || ||||| ||||||| |||||| | || ||||||||||| || | | |
Sbjct 1151 ACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGAC 1092
Query 30062 ACGTAAAACTGAC---ACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118
||||||||||| ||||| ||||| || || || ||||||||| || |
Sbjct 1091 ACGTAAAACTGCGCGAACATG---TGGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGCC 1035
Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178
||||||||||| | | ||| ||||| | ||| ||||| | ||||| || |||
Sbjct 1034 GGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCAC- 976
Query 30179 GCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30237
| | || ||||| || || ||| || | ||| || | |||| | |||||||
Sbjct 975 AAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGTACTC 916
Query 30238 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30297
|| || || || | ||||||||| ||||| || || || || || ||||| || | |
Sbjct 915 GGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGATC 856
Query 30298 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357
| || ||| ||||||| | | | | ||| |||||| ||||||| || | | |
Sbjct 855 CGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATGTC 796
Query 30358 CTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCAC 30417
||| || ||| |||| | | ||| || || |||||| ||||| ||||| |
Sbjct 795 CTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGGC 736
Query 30418 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456
|||| | ||||||||| | ||||||||| || || ||
Sbjct 735 GACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGG 697
>seq8122
Length=2121
Score = 107 bits (118), Expect = 2e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 49066 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGGGTCGCACCCAA 49125
|||||||||||||||| || ||||||||||| || ||| | || ||| ||
Sbjct 1756 TCTCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGT 1697
Query 49126 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 49185
||| || || | |||||||| ||| || | ||||||| |||| | || || || ||||
Sbjct 1696 GGTTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGA 1637
Query 49186 CGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 49245
|||| || || ||| || || || |||| || ||||| | ||||||| |||||
Sbjct 1636 CGTCGATGTGCTTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCCG 1577
Query 49246 GGGGCATCTTCACGGCCAGGTCCGTCTTTACCAG 49279
||| | || ||||||| ||| ||||| || ||
Sbjct 1576 CGGGGACCTGGACGGCCACGTCGGTCTTGACGAG 1543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406257097662288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |