Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 87.8 1e-12
>seq7528
Length=2088
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||| ||||| ||| |||||| || ||||| || || || || ||
Sbjct 218 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGG 159
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || || ||||| || || | ||||||||| || || || | ||||||
Sbjct 158 CCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCC 99
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668
||||| |||||| || || | || ||||| | ||| || || | ||
Sbjct 98 TTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTG 39
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | ||| || ||||| ||||||||
Sbjct 38 ATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||| ||||| ||| |||||| || ||||| || || || || ||
Sbjct 446 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGG 387
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || || || || || | |||||||| || || || | ||||||
Sbjct 386 CCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCC 327
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| || || ||| | || ||||| | ||| || || | |||
Sbjct 326 TTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGT 268
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || ||||| | ||| || ||||| |||||||||
Sbjct 267 GATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 228
Score = 84.2 bits (92), Expect = 1e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||| |||||| || ||||| || || || || || ||||||| || ||
Sbjct 887 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGC 828
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
|| || || || || | ||||||||| || || || | ||||||||||| ||||||
Sbjct 827 TTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 768
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
|| || ||| | || ||||| | ||| || || | ||| || || || |||||
Sbjct 767 TG-CTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGT 709
Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707
| ||| || || || |||||||||
Sbjct 708 GAGCGTCTTGACGAAGATCTGCATG 684
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||| |||||| || ||||| || || || || || ||||||| || ||
Sbjct 659 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGC 600
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
|| ||||| || || | |||||| || || || || | ||||||||||| ||||||
Sbjct 599 TTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTC 540
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
|| || ||| | || ||||| | ||| || || | || || || || |||||
Sbjct 539 TG-CTTCACGTTCTCGATGGTGTCGCTGGGCTCAACGTCGAGAGTGATGGTCTTGCCGGT 481
Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706
| ||| || ||||| ||||||||
Sbjct 480 GAGCGTCTTGACAAAGATCTGCAT 457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314688311804012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |