Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 131 1e-25
seq5348 113 4e-20
seq3754 107 2e-18
seq8082 96.9 3e-15
>seq7528
Length=2088
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || || ||||||||| | || || || || || || || ||
Sbjct 1 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACGCTCGATGTCGAGCCCTCG 60
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || || || || || || ||||| || ||||| || || ||||||
Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || | |||||| | || | ||| ||||||
Sbjct 121 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGCGACTACAAC 180
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | || |||| | || |||| ||||||||
Sbjct 181 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGCAT 230
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || || ||||||||| | || || || || || || || ||
Sbjct 228 CATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTC 287
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || |||| || || || || || || ||||| || ||||| || || |||||
Sbjct 288 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 347
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||| ||||| || | || ||| | || | ||| |||||
Sbjct 348 ACAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 407
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | || |||| | || |||| ||||| ||
Sbjct 408 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGTAT 458
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || || ||||| ||| | || || ||||| || || || ||
Sbjct 684 CATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTC 743
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || |||| || || || || || || ||||| || ||||| || || |||||
Sbjct 744 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 803
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||||| | || | ||| ||||| || | |||||| | || | || |||||
Sbjct 804 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 863
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | || | || | || |||| ||||||||
Sbjct 864 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGCAT 914
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || || ||||| ||| | || || ||||| || || || ||
Sbjct 912 CATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTC 971
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || |||| || || || || || || ||||| || ||||| || || |||||
Sbjct 972 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1031
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||||| | || | ||| ||||| || | || ||| | || | ||| |||||
Sbjct 1032 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 1091
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||| || |||||||| ||| | || | || | || |||| |||||
Sbjct 1092 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 1139
>seq5348
Length=435
Score = 113 bits (124), Expect = 4e-20
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050
||||| |||||||| || || || || ||| |||| || || || || || || || |||
Sbjct 52 CAGATCTTTGTAAAGACCCTCACGGGTAAGACTATCACCCTCGATGTCGAGCCCTCGGAC 111
Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110
| || |||| || || || || ||||| ||||| || ||||| || || |||||||||
Sbjct 112 ACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACAG 171
Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170
|| | || | ||||||||| || | || ||| | || | ||||||||||||
Sbjct 172 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACATC 231
Query 27171 CAAAAGGAGTCGACC 27185
|| |||||||| |||
Sbjct 232 CAGAAGGAGTCCACC 246
>seq3754
Length=471
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || |||||| |||| || || || || || || ||
Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || || || || || || ||||| || ||||| || || ||||||
Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||||||||| || | || ||| | || | ||| || |||
Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||||||| | || |||| | || | || |||||
Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGTGGTGG 227
>seq8082
Length=462
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || ||| | || || || || || || || ||
Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| || || || ||||| ||||| || ||||| || || ||||||
Sbjct 61 GACACGATCGAGAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||||||||| || | || ||| | || | ||| ||||||
Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 180
Query 27168 ATTCAAAAGGAGTCGACC 27185
|| || |||||||| |||
Sbjct 181 ATCCAGAAGGAGTCCACC 198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434859881729280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |