Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7528 131 1e-25 seq5348 113 4e-20 seq3754 107 2e-18 seq8082 96.9 3e-15 >seq7528 Length=2088 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || || || || || || || Sbjct 1 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACGCTCGATGTCGAGCCCTCG 60 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || ||||| || ||||| || || |||||| Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | |||||| | || | ||| |||||| Sbjct 121 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGCGACTACAAC 180 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| | || |||| |||||||| Sbjct 181 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGCAT 230 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| | || || || || || || || || Sbjct 228 CATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTC 287 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || || || ||||| || ||||| || || ||||| Sbjct 288 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 347 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || ||| | || | ||| ||||| Sbjct 348 ACAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 407 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || |||| | || |||| ||||| || Sbjct 408 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGTAT 458 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||| ||| | || || ||||| || || || || Sbjct 684 CATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTC 743 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || || || ||||| || ||||| || || ||||| Sbjct 744 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 803 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | ||| ||||| || | |||||| | || | || ||||| Sbjct 804 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 863 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || | || | || |||| |||||||| Sbjct 864 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGCAT 914 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||| ||| | || || ||||| || || || || Sbjct 912 CATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTC 971 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || || || ||||| || ||||| || || ||||| Sbjct 972 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1031 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | ||| ||||| || | || ||| | || | ||| ||||| Sbjct 1032 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 1091 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| ||| | || | || | || |||| ||||| Sbjct 1092 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 1139 >seq5348 Length=435 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| |||||||| || || || || ||| |||| || || || || || || || ||| Sbjct 52 CAGATCTTTGTAAAGACCCTCACGGGTAAGACTATCACCCTCGATGTCGAGCCCTCGGAC 111 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | || |||| || || || || ||||| ||||| || ||||| || || ||||||||| Sbjct 112 ACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACAG 171 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 || | || | ||||||||| || | || ||| | || | |||||||||||| Sbjct 172 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACATC 231 Query 27171 CAAAAGGAGTCGACC 27185 || |||||||| ||| Sbjct 232 CAGAAGGAGTCCACC 246 >seq3754 Length=471 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| |||| || || || || || || || Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || ||||| || ||||| || || |||||| Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | || | ||| || ||| Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | || |||| | || | || ||||| Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGTGGTGG 227 >seq8082 Length=462 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || || || || || || Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || ||||| ||||| || ||||| || || |||||| Sbjct 61 GACACGATCGAGAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | || | ||| |||||| Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 180 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||| ||| Sbjct 181 ATCCAGAAGGAGTCCACC 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434859881729280