Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7460 150 2e-31 >seq7460 Length=1425 Score = 150 bits (166), Expect = 2e-31 Identities = 471/722 (65%), Gaps = 12/722 (2%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 |||||||||||||| || || || | ||| ||||| | |||||| ||||| |||||| Sbjct 697 CCGCTGCTGACGACCAAGCGCGTCTTTTGGCGCGGCGTCGCCGAGGAACTGCTCTGGTTC 756 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | ||| | ||| | | ||||| ||| | || | | || ||||||| Sbjct 757 ATCTCGGGCGACACCAGCGCCAAGTCGCTGCAGGAAAAGGACATTCACATTTGGGACGGC 816 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 ||||||| || | | || |||||| || || | ||| ||||||||||| | Sbjct 817 AACGGGTCCCGCGCGTACCTTGACAAGATCGGCCTCACGGATCGCGAGGAGGGCGATCTC 876 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 ||||| || ||||| ||||||||| | |||||||| || ||||| | | | | Sbjct 877 GGCCCCGTTTACGGCTTCCAGTGGCGCCACTTTGGCGCCGAGTACAAGACCATGCACGAC 936 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCT---GCAGTACGTGATCGACACCTTGAAGCGG 34519 || || | || ||||| | |||||||| |||| | || | ||||| | || | Sbjct 937 GAGTACGCCGGCCAGGGCGTAGACCAGCTCGCGCAG--CTTG-TGCACACCATCAAAACG 993 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||| ||| | | || | | | || ||||||||| || ||| || ||| Sbjct 994 AACCCGACGGACCGCCGCATGATCCTCTCGGCCTGGAACCCGGCGGCGTTCCACCTCATG 1053 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 || || || || ||||||| || || || ||||| | || || ||||| || ||| Sbjct 1054 GCCCTGCCGCCCTGCCACATGTTCGCGCAGTTTTACGTGTCCAAGGGCGAGCTCTCGTGC 1113 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 || | || || || ||||| ||||| || | || ||||| ||||||||||| ||| Sbjct 1114 CAAATGTACCAGCGGTCGGGCGACATCGGCCTGGGCGTGCCCTTCAACATTGCCTCGTAC 1173 Query 34700 GCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCAT 34759 || || |||||| | || |||| | | || || | |||||| | | | Sbjct 1174 GCGCTTCTCACGCATCTGCTCGCAAAGTGCACCGGCCTGCGCGCCGGGGAGTTCATCC-- 1231 Query 34760 ACGT--TGGGGGA-TGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTG 34816 |||| | || || ||| || || ||| |||||| |||||| ||| | ||||| Sbjct 1232 ACGTCATCGGCGACTGC-CACATTTACAAAAACCACGTCGAGCCCCTCAAGGAACAGCTT 1290 Query 34817 CAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACCTCAATCGAT 34876 | || ||||| || || |||||| ||||||| || | | | |||| ||||| Sbjct 1291 AACCGCGAGCCGCGCCCCTTCCCCAAGCTCAAGATCAACACCGACAACACCGACATCGAC 1350 Query 34877 GACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGCCCTGAAGATG 34936 | ||| | | ||||||| ||| | | |||||| ||| ||| | || | |||||| Sbjct 1351 GGCTTCAAGTACGAGGACCTCGAACTTGTGGGGTACAAGCCCCACAAGACCATCAAGATG 1410 Query 34937 GA 34938 || Sbjct 1411 GA 1412 Score = 150 bits (166), Expect = 2e-31 Identities = 471/722 (65%), Gaps = 12/722 (2%) Strand=Plus/Minus Query 6407 TCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTCCTCGCTCCTAAAG 6466 |||||||| | || | ||| ||| |||||| | | ||| ||||||| | | ||| Sbjct 1412 TCCATCTTGATGGTCTTGTGGGGCTTGTACCCCACAAGTTCGAGGTCCTCGTACTTGAAG 1353 Query 6467 TCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGT 6526 | ||||| |||| | | | || ||||||| |||||| || || ||||| || Sbjct 1352 CCGTCGATGTCGGTGTTGTCGGTGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGG 1293 Query 6527 TGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA-TCCCCCA--AC 6583 | ||||| | ||| |||||| |||||| ||| || || ||| || || | || Sbjct 1292 TTAAGCTGTTCCTTGAGGGGCTCGACGTGGTTTTTGTAAATGTG-GCAGTCGCCGATGAC 1234 Query 6584 GTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGA 6643 || | | | |||||| | || || | | |||| || | |||||| || Sbjct 1233 GT--GGATGAACTCCCCGGCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGC 1176 Query 6644 GCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGC 6703 ||||| ||||||||||| ||||| || | || ||||| ||||| || || || | Sbjct 1175 GCGTACGAGGCAATGTTGAAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATT 1116 Query 6704 TGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGC 6763 ||||| || ||||| || || | ||||| || || || ||||||| || || || Sbjct 1115 TGGCACGAGAGCTCGCCCTTGGACACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGG 1056 Query 6764 GCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGG 6823 ||||| || ||| || ||||||||| || | | | || | | ||| ||| Sbjct 1055 GCCATGAGGTGGAACGCCGCCGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGG 996 Query 6824 TTCCGCTTCAAGGTGTCGATCACGTACTGC---AGCTGGTCCGCTCCCTGTCCCGAATAG 6880 ||| || | ||||| | || | |||| |||||||| | ||||| || | || Sbjct 995 TTCGTTTTGATGGTGTGCA-CAAG--CTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTAC 939 Query 6881 TCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGG 6940 || | | | | ||||| || |||||||| | ||||||||| ||||| || ||| Sbjct 938 TCGTCGTGCATGGTCTTGTACTCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGG 879 Query 6941 CCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCG 7000 || | ||||||||||| ||| | || || |||||| || | | || |||||| Sbjct 878 CCGAGATCGCCCTCCTCGCGATCCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCG 819 Query 7001 TGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTC 7060 | ||||||| || | | || | ||| ||||| | | ||| | ||| Sbjct 818 TTGCCGTCCCAAATGTGAATGTCCTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAG 759 Query 7061 ACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGC 7120 | |||||| ||||| |||||| | ||||| ||| | || || || |||||||||||| Sbjct 758 ATGAACCAGAGCAGTTCCTCGGCGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGC 699 Query 7121 GG 7122 || Sbjct 698 GG 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448202086294080