Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq7460 150 2e-31
>seq7460
Length=1425
Score = 150 bits (166), Expect = 2e-31
Identities = 471/722 (65%), Gaps = 12/722 (2%)
Strand=Plus/Plus
Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282
|||||||||||||| || || || | ||| ||||| | |||||| ||||| ||||||
Sbjct 697 CCGCTGCTGACGACCAAGCGCGTCTTTTGGCGCGGCGTCGCCGAGGAACTGCTCTGGTTC 756
Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342
| ||| | ||| | | ||||| ||| | || | | || |||||||
Sbjct 757 ATCTCGGGCGACACCAGCGCCAAGTCGCTGCAGGAAAAGGACATTCACATTTGGGACGGC 816
Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402
||||||| || | | || |||||| || || | ||| ||||||||||| |
Sbjct 817 AACGGGTCCCGCGCGTACCTTGACAAGATCGGCCTCACGGATCGCGAGGAGGGCGATCTC 876
Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462
||||| || ||||| ||||||||| | |||||||| || ||||| | | | |
Sbjct 877 GGCCCCGTTTACGGCTTCCAGTGGCGCCACTTTGGCGCCGAGTACAAGACCATGCACGAC 936
Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCT---GCAGTACGTGATCGACACCTTGAAGCGG 34519
|| || | || ||||| | |||||||| |||| | || | ||||| | || |
Sbjct 937 GAGTACGCCGGCCAGGGCGTAGACCAGCTCGCGCAG--CTTG-TGCACACCATCAAAACG 993
Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579
||||| ||| | | || | | | || ||||||||| || ||| || |||
Sbjct 994 AACCCGACGGACCGCCGCATGATCCTCTCGGCCTGGAACCCGGCGGCGTTCCACCTCATG 1053
Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639
|| || || || ||||||| || || || ||||| | || || ||||| || |||
Sbjct 1054 GCCCTGCCGCCCTGCCACATGTTCGCGCAGTTTTACGTGTCCAAGGGCGAGCTCTCGTGC 1113
Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699
|| | || || || ||||| ||||| || | || ||||| ||||||||||| |||
Sbjct 1114 CAAATGTACCAGCGGTCGGGCGACATCGGCCTGGGCGTGCCCTTCAACATTGCCTCGTAC 1173
Query 34700 GCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCAT 34759
|| || |||||| | || |||| | | || || | |||||| | | |
Sbjct 1174 GCGCTTCTCACGCATCTGCTCGCAAAGTGCACCGGCCTGCGCGCCGGGGAGTTCATCC-- 1231
Query 34760 ACGT--TGGGGGA-TGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTG 34816
|||| | || || ||| || || ||| |||||| |||||| ||| | |||||
Sbjct 1232 ACGTCATCGGCGACTGC-CACATTTACAAAAACCACGTCGAGCCCCTCAAGGAACAGCTT 1290
Query 34817 CAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACCTCAATCGAT 34876
| || ||||| || || |||||| ||||||| || | | | |||| |||||
Sbjct 1291 AACCGCGAGCCGCGCCCCTTCCCCAAGCTCAAGATCAACACCGACAACACCGACATCGAC 1350
Query 34877 GACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGCCCTGAAGATG 34936
| ||| | | ||||||| ||| | | |||||| ||| ||| | || | ||||||
Sbjct 1351 GGCTTCAAGTACGAGGACCTCGAACTTGTGGGGTACAAGCCCCACAAGACCATCAAGATG 1410
Query 34937 GA 34938
||
Sbjct 1411 GA 1412
Score = 150 bits (166), Expect = 2e-31
Identities = 471/722 (65%), Gaps = 12/722 (2%)
Strand=Plus/Minus
Query 6407 TCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTCCTCGCTCCTAAAG 6466
|||||||| | || | ||| ||| |||||| | | ||| ||||||| | | |||
Sbjct 1412 TCCATCTTGATGGTCTTGTGGGGCTTGTACCCCACAAGTTCGAGGTCCTCGTACTTGAAG 1353
Query 6467 TCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGT 6526
| ||||| |||| | | | || ||||||| |||||| || || ||||| ||
Sbjct 1352 CCGTCGATGTCGGTGTTGTCGGTGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGG 1293
Query 6527 TGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA-TCCCCCA--AC 6583
| ||||| | ||| |||||| |||||| ||| || || ||| || || | ||
Sbjct 1292 TTAAGCTGTTCCTTGAGGGGCTCGACGTGGTTTTTGTAAATGTG-GCAGTCGCCGATGAC 1234
Query 6584 GTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGA 6643
|| | | | |||||| | || || | | |||| || | |||||| ||
Sbjct 1233 GT--GGATGAACTCCCCGGCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGC 1176
Query 6644 GCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGC 6703
||||| ||||||||||| ||||| || | || ||||| ||||| || || || |
Sbjct 1175 GCGTACGAGGCAATGTTGAAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATT 1116
Query 6704 TGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGC 6763
||||| || ||||| || || | ||||| || || || ||||||| || || ||
Sbjct 1115 TGGCACGAGAGCTCGCCCTTGGACACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGG 1056
Query 6764 GCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGG 6823
||||| || ||| || ||||||||| || | | | || | | ||| |||
Sbjct 1055 GCCATGAGGTGGAACGCCGCCGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGG 996
Query 6824 TTCCGCTTCAAGGTGTCGATCACGTACTGC---AGCTGGTCCGCTCCCTGTCCCGAATAG 6880
||| || | ||||| | || | |||| |||||||| | ||||| || | ||
Sbjct 995 TTCGTTTTGATGGTGTGCA-CAAG--CTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTAC 939
Query 6881 TCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGG 6940
|| | | | | ||||| || |||||||| | ||||||||| ||||| || |||
Sbjct 938 TCGTCGTGCATGGTCTTGTACTCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGG 879
Query 6941 CCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCG 7000
|| | ||||||||||| ||| | || || |||||| || | | || ||||||
Sbjct 878 CCGAGATCGCCCTCCTCGCGATCCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCG 819
Query 7001 TGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTC 7060
| ||||||| || | | || | ||| ||||| | | ||| | |||
Sbjct 818 TTGCCGTCCCAAATGTGAATGTCCTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAG 759
Query 7061 ACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGC 7120
| |||||| ||||| |||||| | ||||| ||| | || || || ||||||||||||
Sbjct 758 ATGAACCAGAGCAGTTCCTCGGCGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGC 699
Query 7121 GG 7122
||
Sbjct 698 GG 697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448202086294080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |