Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 185 2e-41
seq5348 183 7e-41
seq3754 179 9e-40
seq8082 167 5e-36
>seq7528
Length=2088
Score = 185 bits (204), Expect = 2e-41
Identities = 168/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || || || | || ||
Sbjct 440 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 381
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||||||||| ||||| ||||| || | || |||||||||
Sbjct 380 TCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 321
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || |||||||| ||||||||||| ||| || || ||||| ||||| |||
Sbjct 320 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 261
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| ||||| | ||||||
Sbjct 260 TTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 229
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || || || | || |||
Sbjct 668 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCT 609
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| ||||| || || || ||||| |||| || |||||||||
Sbjct 608 TCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 549
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || |||||||| ||||||||||| | ||||| ||||||||||| |||
Sbjct 548 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACGTCGAGAGTGATGGTC 489
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| ||||| | ||||||
Sbjct 488 TTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 457
Score = 176 bits (194), Expect = 1e-38
Identities = 166/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || || || | || |||
Sbjct 212 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCT 153
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| ||||| || ||||| ||||| || | || |||||||||
Sbjct 152 TCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 93
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || ||||||||||| ||| || || ||||| ||||| |||
Sbjct 92 TGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTGATGGTC 33
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| ||||| | ||||||
Sbjct 32 TTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || || || | || |||
Sbjct 896 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCT 837
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| || || ||||| ||||| || | || |||||||||
Sbjct 836 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 777
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || |||||||| ||||||||||| ||| || || || || ||||| |||
Sbjct 776 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTC 717
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 716 TTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 685
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || || || | || ||
Sbjct 1124 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 1065
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| || || ||||| ||||| || | || |||||||||
Sbjct 1064 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 1005
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || |||||||| ||||||||||| ||| || || || || ||||| |||
Sbjct 1004 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTC 945
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 944 TTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913
>seq5348
Length=435
Score = 183 bits (202), Expect = 7e-41
Identities = 166/209 (79%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| ||||| || || | || ||
Sbjct 260 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCC 201
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| ||||| ||||| ||||| || | || |||||||||
Sbjct 200 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 141
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || |||||||| ||||||||||| ||| || || ||||| ||||| |||
Sbjct 140 TGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTC 81
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTG 211111
|| |||||||| ||||||||||| | |||
Sbjct 80 TTACCCGTGAGGGTCTTTACAAAGATCTG 52
>seq3754
Length=471
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || ||||| || ||||||||||| || || || | || ||
Sbjct 212 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCC 153
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||||||||| ||||| ||||| || | || |||||||||
Sbjct 152 TCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 93
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || ||||||||||| ||| || || ||||| ||||| |||
Sbjct 92 TGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTC 33
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 32 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1
>seq8082
Length=462
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || || || | || ||
Sbjct 212 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 153
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||||||||| ||||| ||||| || | || |||||||||
Sbjct 152 TCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 93
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| |||||||| ||||| ||||| ||| || || ||||| ||||| |||
Sbjct 92 TGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 33
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 32 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158992137000860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |